| RVdb StrainID | ANM07230 | GenBank Accession | JN541268.1 |
| Species | RVA | Sequence Length | 6851 nt |
| Serotype | 15 Checked by RVdb | Serotype (GenBank) | 15 |
| Definition | Human rhinovirus A strain HRV-A15_p1054_sR221_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A15_p1054_sR221_2008 | Sampling Date | 2008-04-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014311 | 1A (VP4) | 536 | 742 | 0 | 0 | 207 | |
| SQA014312 | 1B (VP2) | 743 | 1528 | 0 | 0 | 786 | |
| SQA014313 | 1C (VP3) | 1529 | 2242 | 0 | 0 | 714 | |
| SQA014314 | 1D (VP1) | 2243 | 3112 | 0 | 0 | 870 | |
| SQA014315 | 2A (P2-A) | 3113 | 3478 | 0 | 1 | 366 | |
| SQA014316 | 2B (P2-B) | 3557 | 3823 | 1 | 0 | 267 | |
| SQA014317 | 2C (P2-C) | 3824 | 4789 | 0 | 0 | 966 | |
| SQA014318 | 3A (P3-A) | 4790 | 5020 | 0 | 0 | 231 | |
| SQA014319 | 3B (VPg) | 5021 | 5083 | 0 | 0 | 63 | |
| SQA014320 | protease 3C | 5084 | 5848 | 0 | 1 | 765 | |
| SQA014321 | 3D | 5849 | 6851 | 1 | 1 | 1003 | |
| SQA014322 | 5'UTR | 1 | 535 | 1 | 0 | 535 | |
| SQA014323 | CDS | 536 | 6851 | 0 | 1 | 6316 | |
| SQA014324 | VP4/2 | 536 | 970 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003380 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA003381 | 3D | 1772 | 2105 | 1 | 1 | 334 | |
| SPA003382 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA003383 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA003384 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA003385 | 2B (P2-B) | 1008 | 1096 | 1 | 0 | 89 | |
| SPA003386 | 2A (P2-A) | 860 | 981 | 0 | 1 | 122 | |
| SPA003387 | 1D (VP1) | 570 | 859 | 0 | 0 | 290 | |
| SPA003388 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003389 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003390 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003391 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003392 | CDS | 1 | 2105 | 0 | 0 | 2105 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |