| RVdb StrainID | ANM07225 | GenBank Accession | JN562722.1 |
| Species | RVA | Sequence Length | 7126 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Human rhinovirus A strain HRV-A16_p1032_sR3162_2009 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A16_p1032_sR3162_2009 | Sampling Date | 2009-11-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014295 | 1A (VP4) | 619 | 825 | 0 | 0 | 207 | |
| SQA014296 | 1B (VP2) | 826 | 1608 | 0 | 0 | 783 | |
| SQA014297 | 1C (VP3) | 1609 | 2322 | 0 | 0 | 714 | |
| SQA014298 | 1D (VP1) | 2323 | 3177 | 0 | 0 | 855 | |
| SQA014299 | 2A (P2-A) | 3178 | 3603 | 0 | 0 | 426 | |
| SQA014300 | 2B (P2-B) | 3604 | 3888 | 0 | 0 | 285 | |
| SQA014301 | 2C (P2-C) | 3889 | 4854 | 0 | 0 | 966 | |
| SQA014302 | 3'UTR | 7081 | 7117 | 0 | 0 | 37 | |
| SQA014303 | 3A (P3-A) | 4855 | 5085 | 0 | 0 | 231 | |
| SQA014304 | 3B (VPg) | 5086 | 5148 | 0 | 0 | 63 | |
| SQA014305 | protease 3C | 5149 | 5697 | 0 | 0 | 549 | |
| SQA014306 | 3D | 5698 | 7077 | 0 | 0 | 1380 | |
| SQA014307 | 5'UTR | 1 | 618 | 0 | 0 | 618 | |
| SQA014308 | CDS | 619 | 7080 | 0 | 0 | 6462 | |
| SQA014309 | VP4/2 | 619 | 1053 | 0 | 0 | 435 | |
| SQA014310 | genome | 1 | 7126 | 0 | 0 | 7126 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003445 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA003446 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA003447 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA003448 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA003449 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA003450 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA003451 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA003452 | 1D (VP1) | 569 | 853 | 0 | 0 | 285 | |
| SPA003453 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA003454 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003455 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003456 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003457 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |