| RVdb StrainID | ANM07165 | GenBank Accession | JN798577.1 |
| Species | RVA | Sequence Length | 6495 nt |
| Serotype | 28 Checked by RVdb | Serotype (GenBank) | 28 |
| Definition | Human rhinovirus A strain HRV-A28_p1175_sR3302_2010 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A28_p1175_sR3302_2010 | Sampling Date | 2010-04-17 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014204 | 1A (VP4) | 266 | 472 | 0 | 0 | 207 | |
| SQA014205 | 1B (VP2) | 473 | 1261 | 0 | 0 | 789 | |
| SQA014206 | 1C (VP3) | 1262 | 1975 | 0 | 0 | 714 | |
| SQA014207 | 1D (VP1) | 1976 | 2848 | 0 | 0 | 873 | |
| SQA014208 | 2A (P2-A) | 2849 | 3277 | 0 | 0 | 429 | |
| SQA014209 | 2B (P2-B) | 3278 | 3562 | 0 | 0 | 285 | |
| SQA014210 | 2C (P2-C) | 3563 | 4525 | 0 | 0 | 963 | |
| SQA014211 | 3A (P3-A) | 4526 | 4759 | 0 | 0 | 234 | |
| SQA014212 | 3B (VPg) | 4760 | 4822 | 0 | 0 | 63 | |
| SQA014213 | protease 3C | 4823 | 5371 | 0 | 0 | 549 | |
| SQA014214 | 3D | 5372 | 6495 | 0 | 1 | 1124 | |
| SQA014215 | 5'UTR | 1 | 265 | 1 | 0 | 265 | |
| SQA014216 | CDS | 266 | 6495 | 0 | 1 | 6230 | |
| SQA014217 | VP4/2 | 266 | 700 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003744 | protease 3C | 1520 | 1702 | 0 | 0 | 183 | |
| SPA003745 | 3D | 1703 | 2077 | 0 | 1 | 375 | |
| SPA003746 | 3B (VPg) | 1499 | 1519 | 0 | 0 | 21 | |
| SPA003747 | 3A (P3-A) | 1421 | 1498 | 0 | 0 | 78 | |
| SPA003748 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA003749 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA003750 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA003751 | 1D (VP1) | 571 | 861 | 0 | 0 | 291 | |
| SPA003752 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003753 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003754 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003755 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003756 | CDS | 1 | 2077 | 0 | 0 | 2077 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |