| RVdb StrainID | ANM07160 | GenBank Accession | JN798583.1 |
| Species | RVA | Sequence Length | 7068 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1164_sR1159_2009 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1164_sR1159_2009 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014188 | 1A (VP4) | 545 | 751 | 0 | 0 | 207 | |
| SQA014189 | 1B (VP2) | 752 | 1552 | 0 | 0 | 801 | |
| SQA014190 | 1C (VP3) | 1553 | 2266 | 0 | 0 | 714 | |
| SQA014191 | 1D (VP1) | 2267 | 3133 | 0 | 0 | 867 | |
| SQA014192 | 2A (P2-A) | 3134 | 3559 | 0 | 0 | 426 | |
| SQA014193 | 2B (P2-B) | 3560 | 3844 | 0 | 0 | 285 | |
| SQA014194 | 2C (P2-C) | 3845 | 4807 | 0 | 0 | 963 | |
| SQA014195 | 3'UTR | 7031 | 7068 | 0 | 1 | 38 | |
| SQA014196 | 3A (P3-A) | 4808 | 5035 | 0 | 0 | 228 | |
| SQA014197 | 3B (VPg) | 5036 | 5098 | 0 | 0 | 63 | |
| SQA014198 | protease 3C | 5099 | 5647 | 0 | 0 | 549 | |
| SQA014199 | 3D | 5648 | 7027 | 0 | 0 | 1380 | |
| SQA014200 | 5'UTR | 1 | 544 | 1 | 0 | 544 | |
| SQA014201 | CDS | 545 | 7030 | 0 | 0 | 6486 | |
| SQA014202 | VP4/2 | 545 | 979 | 0 | 0 | 435 | |
| SQA014203 | genome | 1 | 7068 | 1 | 1 | 7068 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003809 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003810 | 3D | 1702 | 2161 | 0 | 0 | 460 | |
| SPA003811 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003812 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA003813 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA003814 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA003815 | 2A (P2-A) | 864 | 1005 | 0 | 0 | 142 | |
| SPA003816 | 1D (VP1) | 575 | 863 | 0 | 0 | 289 | |
| SPA003817 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA003818 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA003819 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003820 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003821 | CDS | 1 | 2161 | 0 | 0 | 2161 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |