| RVdb StrainID | ANM07155 | GenBank Accession | JN798589.1 |
| Species | RVA | Sequence Length | 6998 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Human rhinovirus A strain HRV-A49_p1100_sR2796_2008 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A49_p1100_sR2796_2008 | Sampling Date | 2008-09-24 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014173 | 1A (VP4) | 541 | 747 | 0 | 0 | 207 | |
| SQA014174 | 1B (VP2) | 748 | 1530 | 0 | 0 | 783 | |
| SQA014175 | 1C (VP3) | 1531 | 2241 | 0 | 0 | 711 | |
| SQA014176 | 1D (VP1) | 2242 | 3090 | 0 | 0 | 849 | |
| SQA014177 | 2A (P2-A) | 3091 | 3516 | 0 | 0 | 426 | |
| SQA014178 | 2B (P2-B) | 3517 | 3801 | 0 | 0 | 285 | |
| SQA014179 | 2C (P2-C) | 3802 | 4767 | 0 | 0 | 966 | |
| SQA014180 | 3A (P3-A) | 4768 | 4998 | 0 | 0 | 231 | |
| SQA014181 | 3B (VPg) | 4999 | 5061 | 0 | 0 | 63 | |
| SQA014182 | protease 3C | 5062 | 5610 | 0 | 0 | 549 | |
| SQA014183 | 3D | 5611 | 6990 | 0 | 0 | 1380 | |
| SQA014184 | 5'UTR | 1 | 540 | 1 | 0 | 540 | |
| SQA014185 | CDS | 541 | 6993 | 0 | 0 | 6453 | |
| SQA014186 | VP4/2 | 541 | 975 | 0 | 0 | 435 | |
| SQA014187 | genome | 1 | 6998 | 1 | 1 | 6998 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003874 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA003875 | 3D | 1691 | 2150 | 0 | 0 | 460 | |
| SPA003876 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA003877 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA003878 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA003879 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA003880 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA003881 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA003882 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA003883 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003884 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003885 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003886 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |