| RVdb StrainID | ANM07150 | GenBank Accession | JN815242.1 |
| Species | RVA | Sequence Length | 6863 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1201_sR3025_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1201_sR3025_2009 | Sampling Date | 2009-04-18 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014159 | 1A (VP4) | 532 | 738 | 0 | 0 | 207 | |
| SQA014160 | 1B (VP2) | 739 | 1551 | 0 | 0 | 813 | |
| SQA014161 | 1C (VP3) | 1552 | 2265 | 0 | 0 | 714 | |
| SQA014162 | 1D (VP1) | 2266 | 3132 | 0 | 0 | 867 | |
| SQA014163 | 2A (P2-A) | 3133 | 3558 | 0 | 0 | 426 | |
| SQA014164 | 2B (P2-B) | 3559 | 3843 | 0 | 0 | 285 | |
| SQA014165 | 2C (P2-C) | 3844 | 4806 | 0 | 0 | 963 | |
| SQA014166 | 3A (P3-A) | 4807 | 5034 | 0 | 0 | 228 | |
| SQA014167 | 3B (VPg) | 5035 | 5097 | 0 | 0 | 63 | |
| SQA014168 | protease 3C | 5098 | 5646 | 0 | 0 | 549 | |
| SQA014169 | 3D | 5647 | 6863 | 0 | 1 | 1217 | |
| SQA014170 | 5'UTR | 1 | 531 | 1 | 0 | 531 | |
| SQA014171 | CDS | 532 | 6863 | 0 | 1 | 6332 | |
| SQA014172 | VP4/2 | 532 | 966 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004017 | protease 3C | 1523 | 1705 | 0 | 0 | 183 | |
| SPA004018 | 3D | 1706 | 2111 | 0 | 1 | 406 | |
| SPA004019 | 3B (VPg) | 1502 | 1522 | 0 | 0 | 21 | |
| SPA004020 | 3A (P3-A) | 1426 | 1501 | 0 | 0 | 76 | |
| SPA004021 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA004022 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA004023 | 2A (P2-A) | 868 | 1009 | 0 | 0 | 142 | |
| SPA004024 | 1D (VP1) | 579 | 867 | 0 | 0 | 289 | |
| SPA004025 | 1C (VP3) | 341 | 578 | 0 | 0 | 238 | |
| SPA004026 | 1B (VP2) | 70 | 340 | 0 | 0 | 271 | |
| SPA004027 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004028 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004029 | CDS | 1 | 2111 | 0 | 0 | 2111 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |