| RVdb StrainID | ANM07145 | GenBank Accession | JN815253.1 |
| Species | RVA | Sequence Length | 6846 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Human rhinovirus A strain HRV-A16_p1172_sR1216_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A16_p1172_sR1216_2009 | Sampling Date | 2009-04-18 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014145 | 1A (VP4) | 549 | 755 | 0 | 0 | 207 | |
| SQA014146 | 1B (VP2) | 756 | 1538 | 0 | 0 | 783 | |
| SQA014147 | 1C (VP3) | 1539 | 2252 | 0 | 0 | 714 | |
| SQA014148 | 1D (VP1) | 2253 | 3107 | 0 | 0 | 855 | |
| SQA014149 | 2A (P2-A) | 3108 | 3533 | 0 | 0 | 426 | |
| SQA014150 | 2B (P2-B) | 3534 | 3818 | 0 | 0 | 285 | |
| SQA014151 | 2C (P2-C) | 3819 | 4784 | 0 | 0 | 966 | |
| SQA014152 | 3A (P3-A) | 4785 | 5015 | 0 | 0 | 231 | |
| SQA014153 | 3B (VPg) | 5016 | 5078 | 0 | 0 | 63 | |
| SQA014154 | protease 3C | 5079 | 5627 | 0 | 0 | 549 | |
| SQA014155 | 3D | 5628 | 6846 | 0 | 1 | 1219 | |
| SQA014156 | 5'UTR | 1 | 548 | 1 | 0 | 548 | |
| SQA014157 | CDS | 549 | 6846 | 0 | 1 | 6298 | |
| SQA014158 | VP4/2 | 549 | 983 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004082 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA004083 | 3D | 1694 | 2099 | 0 | 1 | 406 | |
| SPA004084 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA004085 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA004086 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA004087 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA004088 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA004089 | 1D (VP1) | 569 | 853 | 0 | 0 | 285 | |
| SPA004090 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA004091 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004092 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004093 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004094 | CDS | 1 | 2099 | 0 | 0 | 2099 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |