RVdb StrainID | ANM07140 | GenBank Accession | JN837693.1 |
Species | RVA | Sequence Length | 7013 nt |
Serotype | 21 Checked by RVdb | Serotype (GenBank) | 21 |
Definition | Human rhinovirus A strain HRV-A21_p1177_sR3307_2010 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
Strain Name | HRV-A21_p1177_sR3307_2010 | Sampling Date | 2010-04-17 |
Sampling Country | USA | Sampling location | Madison, WI |
Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA014131 | 1A (VP4) | 544 | 750 | 0 | 0 | 207 | |
SQA014132 | 1B (VP2) | 751 | 1530 | 0 | 0 | 780 | |
SQA014133 | 1C (VP3) | 1531 | 2253 | 0 | 0 | 723 | |
SQA014134 | 1D (VP1) | 2254 | 3114 | 0 | 0 | 861 | |
SQA014135 | 2A (P2-A) | 3115 | 3540 | 0 | 0 | 426 | |
SQA014136 | 2B (P2-B) | 3541 | 3825 | 0 | 0 | 285 | |
SQA014137 | 2C (P2-C) | 3826 | 4791 | 0 | 0 | 966 | |
SQA014138 | 3A (P3-A) | 4792 | 5022 | 0 | 0 | 231 | |
SQA014139 | 3B (VPg) | 5023 | 5085 | 0 | 0 | 63 | |
SQA014140 | protease 3C | 5086 | 5634 | 0 | 0 | 549 | |
SQA014141 | 3D | 5635 | 7013 | 0 | 1 | 1379 | |
SQA014142 | 5'UTR | 1 | 543 | 1 | 0 | 543 | |
SQA014143 | CDS | 544 | 7013 | 0 | 1 | 6470 | |
SQA014144 | VP4/2 | 544 | 978 | 0 | 0 | 435 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA003926 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
SPA003927 | 3D | 1698 | 2156 | 0 | 1 | 459 | |
SPA003928 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
SPA003929 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
SPA003930 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
SPA003931 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
SPA003932 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
SPA003933 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
SPA003934 | 1C (VP3) | 330 | 570 | 0 | 0 | 241 | |
SPA003935 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
SPA003936 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA003937 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA003938 | CDS | 1 | 2156 | 0 | 0 | 2156 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |