RVdb StrainID ANM07140 GenBank Accession JN837693.1
Species RVA Sequence Length 7013 nt
Serotype 21  Checked by RVdb Serotype (GenBank) 21
Definition Human rhinovirus A strain HRV-A21_p1177_sR3307_2010 polyprotein gene, partial cds GenBank Submission Date 2017-01-25
Strain Name HRV-A21_p1177_sR3307_2010 Sampling Date 2010-04-17
Sampling Country USA Sampling location Madison, WI
Isolation Source oronasal secretion [ENVO:02000035] NCBI Taxon ID 147711
Sequencing Technology Illumina Assembly Method Velvet 1.1.04

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA014131 1A (VP4) 544 750 0 0 207
SQA014132 1B (VP2) 751 1530 0 0 780
SQA014133 1C (VP3) 1531 2253 0 0 723
SQA014134 1D (VP1) 2254 3114 0 0 861
SQA014135 2A (P2-A) 3115 3540 0 0 426
SQA014136 2B (P2-B) 3541 3825 0 0 285
SQA014137 2C (P2-C) 3826 4791 0 0 966
SQA014138 3A (P3-A) 4792 5022 0 0 231
SQA014139 3B (VPg) 5023 5085 0 0 63
SQA014140 protease 3C 5086 5634 0 0 549
SQA014141 3D 5635 7013 0 1 1379
SQA014142 5'UTR 1 543 1 0 543
SQA014143 CDS 544 7013 0 1 6470
SQA014144 VP4/2 544 978 0 0 435
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA003926 protease 3C 1515 1697 0 0 183
SPA003927 3D 1698 2156 0 1 459
SPA003928 3B (VPg) 1494 1514 0 0 21
SPA003929 3A (P3-A) 1417 1493 0 0 77
SPA003930 2C (P2-C) 1095 1416 0 0 322
SPA003931 2B (P2-B) 1000 1094 0 0 95
SPA003932 2A (P2-A) 858 999 0 0 142
SPA003933 1D (VP1) 571 857 0 0 287
SPA003934 1C (VP3) 330 570 0 0 241
SPA003935 1B (VP2) 70 329 0 0 260
SPA003936 1A (VP4) 1 69 0 0 69
SPA003937 VP4/2 1 145 0 0 145
SPA003938 CDS 1 2156 0 0 2156
PMID Title Publication Year Journal View in RVdb
24675855 Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. 2014 Genome Announc View More