| RVdb StrainID | ANM06925 | GenBank Accession | JN990707.1 |
| Species | RVA | Sequence Length | 6748 nt |
| Serotype | 33 Checked by RVdb | Serotype (GenBank) | 33 |
| Definition | Human rhinovirus A strain HRV-A33_p1152_sR1114_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A33_p1152_sR1114_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013996 | 1A (VP4) | 402 | 608 | 0 | 0 | 207 | |
| SQA013997 | 1B (VP2) | 609 | 1394 | 0 | 0 | 786 | |
| SQA013998 | 1C (VP3) | 1395 | 2108 | 0 | 0 | 714 | |
| SQA013999 | 1D (VP1) | 2109 | 2966 | 0 | 0 | 858 | |
| SQA014000 | 2A (P2-A) | 2967 | 3392 | 0 | 0 | 426 | |
| SQA014001 | 2B (P2-B) | 3393 | 3677 | 0 | 0 | 285 | |
| SQA014002 | 2C (P2-C) | 3678 | 4643 | 0 | 0 | 966 | |
| SQA014003 | 3A (P3-A) | 4644 | 4874 | 0 | 0 | 231 | |
| SQA014004 | 3B (VPg) | 4875 | 4937 | 0 | 0 | 63 | |
| SQA014005 | protease 3C | 4938 | 5486 | 0 | 0 | 549 | |
| SQA014006 | 3D | 5487 | 6748 | 0 | 1 | 1262 | |
| SQA014007 | 5'UTR | 1 | 401 | 1 | 0 | 401 | |
| SQA014008 | CDS | 402 | 6748 | 0 | 1 | 6347 | |
| SQA014009 | VP4/2 | 402 | 836 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004159 | protease 3C | 1591 | 1695 | 1 | 0 | 105 | |
| SPA004160 | 3D | 1696 | 2115 | 0 | 1 | 420 | |
| SPA004161 | 3A (P3-A) | 1415 | 1427 | 0 | 1 | 13 | |
| SPA004162 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA004163 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA004164 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA004165 | 1D (VP1) | 570 | 855 | 0 | 0 | 286 | |
| SPA004166 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA004167 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004168 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004169 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004170 | CDS | 1 | 2115 | 0 | 0 | 2115 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |