| RVdb StrainID | ANM06910 | GenBank Accession | JQ245966.1 |
| Species | RVA | Sequence Length | 6627 nt |
| Serotype | 65 Checked by RVdb | Serotype (GenBank) | 65 |
| Definition | Human rhinovirus A strain HRV-A65_p1038_sR152_2007 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A65_p1038_sR152_2007 | Sampling Date | 2007 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013980 | 1A (VP4) | 445 | 651 | 0 | 0 | 207 | |
| SQA013981 | 1B (VP2) | 652 | 1437 | 0 | 0 | 786 | |
| SQA013982 | 1C (VP3) | 1438 | 2151 | 0 | 0 | 714 | |
| SQA013983 | 1D (VP1) | 2152 | 3039 | 0 | 0 | 888 | |
| SQA013984 | 2A (P2-A) | 3040 | 3468 | 0 | 0 | 429 | |
| SQA013985 | 2B (P2-B) | 3469 | 3753 | 0 | 0 | 285 | |
| SQA013986 | 2C (P2-C) | 3754 | 4716 | 0 | 0 | 963 | |
| SQA013987 | 3A (P3-A) | 4717 | 4950 | 0 | 0 | 234 | |
| SQA013988 | 3B (VPg) | 4951 | 5013 | 0 | 0 | 63 | |
| SQA013989 | protease 3C | 5014 | 5562 | 0 | 0 | 549 | |
| SQA013990 | 3D | 5563 | 6627 | 0 | 1 | 1065 | |
| SQA013991 | 5'UTR | 1 | 444 | 1 | 0 | 444 | |
| SQA013992 | CDS | 445 | 6627 | 0 | 1 | 6183 | |
| SQA013993 | VP4/2 | 445 | 879 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004847 | protease 3C | 1524 | 1706 | 0 | 0 | 183 | |
| SPA004848 | 3D | 1707 | 2061 | 0 | 1 | 355 | |
| SPA004849 | 3B (VPg) | 1503 | 1523 | 0 | 0 | 21 | |
| SPA004850 | 3A (P3-A) | 1425 | 1502 | 0 | 0 | 78 | |
| SPA004851 | 2C (P2-C) | 1104 | 1424 | 0 | 0 | 321 | |
| SPA004852 | 2B (P2-B) | 1009 | 1103 | 0 | 0 | 95 | |
| SPA004853 | 2A (P2-A) | 866 | 1008 | 0 | 0 | 143 | |
| SPA004854 | 1D (VP1) | 570 | 865 | 0 | 0 | 296 | |
| SPA004855 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA004856 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004857 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004858 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004859 | CDS | 1 | 2061 | 0 | 0 | 2061 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |