| RVdb StrainID | ANM06815 | GenBank Accession | JQ747750.1 |
| Species | RVA | Sequence Length | 6888 nt |
| Serotype | 19 Checked by RVdb | Serotype (GenBank) | 19 |
| Definition | Human rhinovirus A strain HRV-A19_p1294_s6535_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A19_p1294_s6535_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013944 | 1A (VP4) | 698 | 904 | 0 | 0 | 207 | |
| SQA013945 | 1B (VP2) | 905 | 1687 | 0 | 0 | 783 | |
| SQA013946 | 1C (VP3) | 1688 | 2401 | 0 | 0 | 714 | |
| SQA013947 | 1D (VP1) | 2402 | 3271 | 0 | 0 | 870 | |
| SQA013948 | 2A (P2-A) | 3272 | 3700 | 0 | 0 | 429 | |
| SQA013949 | 2B (P2-B) | 3701 | 3985 | 0 | 0 | 285 | |
| SQA013950 | 2C (P2-C) | 3986 | 4951 | 0 | 0 | 966 | |
| SQA013951 | 3A (P3-A) | 4952 | 5182 | 0 | 0 | 231 | |
| SQA013952 | 3B (VPg) | 5183 | 5245 | 0 | 0 | 63 | |
| SQA013953 | protease 3C | 5246 | 5794 | 0 | 0 | 549 | |
| SQA013954 | 3D | 5795 | 6888 | 0 | 1 | 1094 | |
| SQA013955 | 5'UTR | 86 | 697 | 0 | 0 | 612 | |
| SQA013956 | CDS | 698 | 6888 | 0 | 1 | 6191 | |
| SQA013957 | VP4/2 | 698 | 1132 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004808 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA004809 | 3D | 1700 | 2064 | 0 | 1 | 365 | |
| SPA004810 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA004811 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA004812 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA004813 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA004814 | 2A (P2-A) | 859 | 976 | 0 | 1 | 118 | |
| SPA004815 | 1D (VP1) | 569 | 858 | 0 | 0 | 290 | |
| SPA004816 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA004817 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004818 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004819 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004820 | CDS | 1 | 2064 | 0 | 0 | 2064 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |