| RVdb StrainID | ANM06810 | GenBank Accession | JQ837719.1 |
| Species | RVA | Sequence Length | 6989 nt |
| Serotype | 89 Checked by RVdb | Serotype (GenBank) | 89 |
| Definition | Human rhinovirus A strain HRV-A89_p1052_s3032_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A89_p1052_s3032_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013930 | 1A (VP4) | 544 | 750 | 0 | 0 | 207 | |
| SQA013931 | 1B (VP2) | 751 | 1551 | 0 | 0 | 801 | |
| SQA013932 | 1C (VP3) | 1552 | 2265 | 0 | 0 | 714 | |
| SQA013933 | 1D (VP1) | 2266 | 3141 | 0 | 0 | 876 | |
| SQA013934 | 2A (P2-A) | 3142 | 3567 | 0 | 0 | 426 | |
| SQA013935 | 2B (P2-B) | 3568 | 3852 | 0 | 0 | 285 | |
| SQA013936 | 2C (P2-C) | 3853 | 4815 | 0 | 0 | 963 | |
| SQA013937 | 3A (P3-A) | 4816 | 5043 | 0 | 0 | 228 | |
| SQA013938 | 3B (VPg) | 5044 | 5106 | 0 | 0 | 63 | |
| SQA013939 | protease 3C | 5107 | 5655 | 0 | 0 | 549 | |
| SQA013940 | 3D | 5656 | 6989 | 0 | 1 | 1334 | |
| SQA013941 | 5'UTR | 1 | 543 | 1 | 0 | 543 | |
| SQA013942 | CDS | 544 | 6989 | 0 | 1 | 6446 | |
| SQA013943 | VP4/2 | 544 | 978 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004961 | protease 3C | 1522 | 1704 | 0 | 0 | 183 | |
| SPA004962 | 3D | 1705 | 2148 | 0 | 1 | 444 | |
| SPA004963 | 3B (VPg) | 1501 | 1521 | 0 | 0 | 21 | |
| SPA004964 | 3A (P3-A) | 1425 | 1500 | 0 | 0 | 76 | |
| SPA004965 | 2C (P2-C) | 1104 | 1424 | 0 | 0 | 321 | |
| SPA004966 | 2B (P2-B) | 1009 | 1103 | 0 | 0 | 95 | |
| SPA004967 | 2A (P2-A) | 867 | 1008 | 0 | 0 | 142 | |
| SPA004968 | 1D (VP1) | 575 | 866 | 0 | 0 | 292 | |
| SPA004969 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA004970 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA004971 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004972 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004973 | CDS | 1 | 2148 | 0 | 0 | 2148 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |