RVdb StrainID | ANM06805 | GenBank Accession | JQ994494.1 |
Species | RVA | Sequence Length | 6352 nt |
Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
Definition | Human rhinovirus A strain HRV-A20_p1068_sR680_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
Strain Name | HRV-A20_p1068_sR680_2008 | Sampling Date | 2008 |
Sampling Country | USA | Sampling location | Madison, WI |
Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.01 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA013916 | 1A (VP4) | 472 | 678 | 0 | 0 | 207 | |
SQA013917 | 1B (VP2) | 679 | 1464 | 0 | 0 | 786 | |
SQA013918 | 1C (VP3) | 1465 | 2178 | 0 | 0 | 714 | |
SQA013919 | 1D (VP1) | 2179 | 3069 | 0 | 0 | 891 | |
SQA013920 | 2A (P2-A) | 3070 | 3498 | 0 | 0 | 429 | |
SQA013921 | 2B (P2-B) | 3499 | 3783 | 0 | 0 | 285 | |
SQA013922 | 2C (P2-C) | 3784 | 4746 | 0 | 0 | 963 | |
SQA013923 | 3A (P3-A) | 4747 | 4980 | 0 | 0 | 234 | |
SQA013924 | 3B (VPg) | 4981 | 5043 | 0 | 0 | 63 | |
SQA013925 | protease 3C | 5044 | 5592 | 0 | 0 | 549 | |
SQA013926 | 3D | 5593 | 6352 | 0 | 1 | 760 | |
SQA013927 | 5'UTR | 1 | 471 | 1 | 0 | 471 | |
SQA013928 | CDS | 472 | 6352 | 0 | 1 | 5881 | |
SQA013929 | VP4/2 | 472 | 906 | 0 | 0 | 435 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA005000 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
SPA005001 | 3D | 1708 | 1960 | 0 | 1 | 253 | |
SPA005002 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
SPA005003 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
SPA005004 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
SPA005005 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
SPA005006 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
SPA005007 | 1D (VP1) | 570 | 866 | 0 | 0 | 297 | |
SPA005008 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
SPA005009 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
SPA005010 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA005011 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA005012 | CDS | 1 | 1960 | 0 | 0 | 1960 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |