RVdb StrainID ANM06805 GenBank Accession JQ994494.1
Species RVA Sequence Length 6352 nt
Serotype 20  Checked by RVdb Serotype (GenBank) 20
Definition Human rhinovirus A strain HRV-A20_p1068_sR680_2008 polyprotein gene, partial cds GenBank Submission Date 2017-01-25
Strain Name HRV-A20_p1068_sR680_2008 Sampling Date 2008
Sampling Country USA Sampling location Madison, WI
Isolation Source -N/A- NCBI Taxon ID 147711
Sequencing Technology Illumina Assembly Method Velvet 1.1.01

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA013916 1A (VP4) 472 678 0 0 207
SQA013917 1B (VP2) 679 1464 0 0 786
SQA013918 1C (VP3) 1465 2178 0 0 714
SQA013919 1D (VP1) 2179 3069 0 0 891
SQA013920 2A (P2-A) 3070 3498 0 0 429
SQA013921 2B (P2-B) 3499 3783 0 0 285
SQA013922 2C (P2-C) 3784 4746 0 0 963
SQA013923 3A (P3-A) 4747 4980 0 0 234
SQA013924 3B (VPg) 4981 5043 0 0 63
SQA013925 protease 3C 5044 5592 0 0 549
SQA013926 3D 5593 6352 0 1 760
SQA013927 5'UTR 1 471 1 0 471
SQA013928 CDS 472 6352 0 1 5881
SQA013929 VP4/2 472 906 0 0 435
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA005000 protease 3C 1525 1707 0 0 183
SPA005001 3D 1708 1960 0 1 253
SPA005002 3B (VPg) 1504 1524 0 0 21
SPA005003 3A (P3-A) 1426 1503 0 0 78
SPA005004 2C (P2-C) 1105 1425 0 0 321
SPA005005 2B (P2-B) 1010 1104 0 0 95
SPA005006 2A (P2-A) 867 1009 0 0 143
SPA005007 1D (VP1) 570 866 0 0 297
SPA005008 1C (VP3) 332 569 0 0 238
SPA005009 1B (VP2) 70 331 0 0 262
SPA005010 1A (VP4) 1 69 0 0 69
SPA005011 VP4/2 1 145 0 0 145
SPA005012 CDS 1 1960 0 0 1960
PMID Title Publication Year Journal View in RVdb
24675855 Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. 2014 Genome Announc View More