| RVdb StrainID | ANM06800 | GenBank Accession | JX074047.1 |
| Species | RVA | Sequence Length | 6878 nt |
| Serotype | 104 Corrected by RVdb | Serotype (GenBank) | 24 |
| Definition | Human rhinovirus A strain HRV-A24_p1131_sR2052_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A24_p1131_sR2052_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013902 | 1A (VP4) | 443 | 649 | 0 | 0 | 207 | |
| SQA013903 | 1B (VP2) | 650 | 1435 | 0 | 0 | 786 | |
| SQA013904 | 1C (VP3) | 1436 | 2149 | 0 | 0 | 714 | |
| SQA013905 | 1D (VP1) | 2150 | 3004 | 0 | 0 | 855 | |
| SQA013906 | 2A (P2-A) | 3005 | 3430 | 0 | 0 | 426 | |
| SQA013907 | 2B (P2-B) | 3431 | 3715 | 0 | 0 | 285 | |
| SQA013908 | 2C (P2-C) | 3716 | 4681 | 0 | 0 | 966 | |
| SQA013909 | 3A (P3-A) | 4682 | 4912 | 0 | 0 | 231 | |
| SQA013910 | 3B (VPg) | 4913 | 4975 | 0 | 0 | 63 | |
| SQA013911 | protease 3C | 4976 | 5524 | 0 | 0 | 549 | |
| SQA013912 | 3D | 5525 | 6878 | 0 | 1 | 1354 | |
| SQA013913 | 5'UTR | 1 | 442 | 1 | 0 | 442 | |
| SQA013914 | CDS | 548 | 6878 | 1 | 1 | 6331 | |
| SQA013915 | VP4/2 | 443 | 877 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005065 | protease 3C | 1477 | 1659 | 0 | 0 | 183 | |
| SPA005066 | 3D | 1660 | 2110 | 0 | 1 | 451 | |
| SPA005067 | 3B (VPg) | 1456 | 1476 | 0 | 0 | 21 | |
| SPA005068 | 3A (P3-A) | 1379 | 1455 | 0 | 0 | 77 | |
| SPA005069 | 2C (P2-C) | 1057 | 1378 | 0 | 0 | 322 | |
| SPA005070 | 2B (P2-B) | 962 | 1056 | 0 | 0 | 95 | |
| SPA005071 | 2A (P2-A) | 820 | 961 | 0 | 0 | 142 | |
| SPA005072 | 1D (VP1) | 535 | 819 | 0 | 0 | 285 | |
| SPA005073 | 1C (VP3) | 297 | 534 | 0 | 0 | 238 | |
| SPA005074 | 1B (VP2) | 35 | 296 | 0 | 0 | 262 | |
| SPA005075 | 1A (VP4) | 1 | 34 | 1 | 0 | 34 | |
| SPA005076 | CDS | 1 | 2110 | 0 | 0 | 2110 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |