| RVdb StrainID | ANM06795 | GenBank Accession | JX074057.1 |
| Species | RVA | Sequence Length | 6979 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Human rhinovirus A strain HRV-A16_p1192_sR2968_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A16_p1192_sR2968_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Celera 7.0 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013888 | 1A (VP4) | 530 | 736 | 0 | 0 | 207 | |
| SQA013889 | 1B (VP2) | 737 | 1519 | 0 | 0 | 783 | |
| SQA013890 | 1C (VP3) | 1520 | 2233 | 0 | 0 | 714 | |
| SQA013891 | 1D (VP1) | 2234 | 3088 | 0 | 0 | 855 | |
| SQA013892 | 2A (P2-A) | 3089 | 3412 | 0 | 1 | 324 | |
| SQA013893 | 2B (P2-B) | 3533 | 3799 | 1 | 0 | 267 | |
| SQA013894 | 2C (P2-C) | 3800 | 4765 | 0 | 0 | 966 | |
| SQA013895 | 3A (P3-A) | 4766 | 4996 | 0 | 0 | 231 | |
| SQA013896 | 3B (VPg) | 4997 | 5059 | 0 | 0 | 63 | |
| SQA013897 | protease 3C | 5060 | 5677 | 0 | 1 | 618 | |
| SQA013898 | 3D | 5678 | 6979 | 1 | 1 | 1302 | |
| SQA013899 | 5'UTR | 1 | 529 | 1 | 0 | 529 | |
| SQA013900 | CDS | 530 | 6979 | 0 | 1 | 6450 | |
| SQA013901 | VP4/2 | 530 | 964 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005129 | protease 3C | 1511 | 1652 | 0 | 1 | 142 | |
| SPA005130 | 3D | 1717 | 2150 | 1 | 1 | 434 | |
| SPA005131 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA005132 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA005133 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA005134 | 2B (P2-B) | 1002 | 1090 | 1 | 0 | 89 | |
| SPA005135 | 2A (P2-A) | 854 | 961 | 0 | 1 | 108 | |
| SPA005136 | 1D (VP1) | 569 | 853 | 0 | 0 | 285 | |
| SPA005137 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA005138 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA005139 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005140 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005141 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |