| RVdb StrainID | ANM00005 | GenBank Accession | ON989185.1 |
| Species | RVA | Sequence Length | 3983 nt |
| Serotype | 88 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus A strain RV-AZ88-USA-Nov-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-10-08 |
| Strain Name | RV-AZ88-USA-Nov-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA007786 | 1A (VP4) | 86 | 292 | 0 | 0 | 207 | |
| SQA007787 | 1B (VP2) | 293 | 1087 | 0 | 0 | 795 | |
| SQA007788 | 1C (VP3) | 1088 | 1801 | 0 | 0 | 714 | |
| SQA007789 | 1D (VP1) | 1802 | 2671 | 0 | 0 | 870 | |
| SQA007790 | 2A (P2-A) | 2672 | 3097 | 0 | 0 | 426 | |
| SQA007791 | 2B (P2-B) | 3098 | 3382 | 0 | 0 | 285 | |
| SQA007792 | 2C (P2-C) | 3383 | 3983 | 0 | 1 | 601 | |
| SQA007793 | CDS | 86 | 3983 | 0 | 1 | 3898 | |
| SQA007794 | VP4/2 | 86 | 520 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA031938 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA031939 | 2A (P2-A) | 864 | 1004 | 0 | 0 | 141 | |
| SPA031940 | 1D (VP1) | 573 | 863 | 0 | 0 | 291 | |
| SPA031941 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA031942 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA031943 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA031944 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA031945 | CDS | 1 | 1299 | 0 | 0 | 1299 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |