| RVdb StrainID | ANC07954 | GenBank Accession | FJ445121.1 |
| Species | RVA | Sequence Length | 7134 nt |
| Serotype | 21 Checked by RVdb | Serotype (GenBank) | 21 |
| Definition | Human rhinovirus 21 strain ATCC VR-1131, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | ATCC VR-1131 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 44128 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA007005 | 1A (VP4) | 615 | 821 | 0 | 0 | 207 | |
| SQA007006 | 1B (VP2) | 822 | 1601 | 0 | 0 | 780 | |
| SQA007007 | 1C (VP3) | 1602 | 2324 | 0 | 0 | 723 | |
| SQA007008 | 1D (VP1) | 2325 | 3185 | 0 | 0 | 861 | |
| SQA007009 | 2A (P2-A) | 3186 | 3611 | 0 | 0 | 426 | |
| SQA007010 | 2B (P2-B) | 3612 | 3896 | 0 | 0 | 285 | |
| SQA007011 | 2C (P2-C) | 3897 | 4862 | 0 | 0 | 966 | |
| SQA007012 | 3'UTR | 7089 | 7134 | 0 | 0 | 46 | |
| SQA007013 | 3A (P3-A) | 4863 | 5093 | 0 | 0 | 231 | |
| SQA007014 | 3B (VPg) | 5094 | 5156 | 0 | 0 | 63 | |
| SQA007015 | protease 3C | 5157 | 5705 | 0 | 0 | 549 | |
| SQA007016 | 3D | 5706 | 7085 | 0 | 0 | 1380 | |
| SQA007017 | 5'UTR | 1 | 614 | 0 | 0 | 614 | |
| SQA007018 | CDS | 615 | 7088 | 0 | 0 | 6474 | |
| SQA007019 | VP4/2 | 615 | 1049 | 0 | 0 | 435 | |
| SQA007020 | genome | 1 | 7134 | 0 | 0 | 7134 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001230 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA001231 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA001232 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA001233 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA001234 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA001235 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA001236 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA001237 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA001238 | 1C (VP3) | 330 | 570 | 0 | 0 | 241 | |
| SPA001239 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA001240 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001241 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001242 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |