RVdb StrainID | ANC07949 | GenBank Accession | FJ445127.1 |
Species | RVA | Sequence Length | 7133 nt |
Serotype | 32 Checked by RVdb | Serotype (GenBank) | 32 |
Definition | Human rhinovirus 32 strain ATCC VR-1142, complete genome | GenBank Submission Date | 2009-04-10 |
Strain Name | ATCC VR-1142 | Sampling Date | -N/A- |
Sampling Country | USA | Sampling location | -N/A- |
Isolation Source | -N/A- | NCBI Taxon ID | 185903 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA006989 | 1A (VP4) | 611 | 817 | 0 | 0 | 207 | |
SQA006990 | 1B (VP2) | 818 | 1603 | 0 | 0 | 786 | |
SQA006991 | 1C (VP3) | 1604 | 2317 | 0 | 0 | 714 | |
SQA006992 | 1D (VP1) | 2318 | 3184 | 0 | 0 | 867 | |
SQA006993 | 2A (P2-A) | 3185 | 3610 | 0 | 0 | 426 | |
SQA006994 | 2B (P2-B) | 3611 | 3895 | 0 | 0 | 285 | |
SQA006995 | 2C (P2-C) | 3896 | 4861 | 0 | 0 | 966 | |
SQA006996 | 3'UTR | 7088 | 7133 | 0 | 0 | 46 | |
SQA006997 | 3A (P3-A) | 4862 | 5092 | 0 | 0 | 231 | |
SQA006998 | 3B (VPg) | 5093 | 5155 | 0 | 0 | 63 | |
SQA006999 | protease 3C | 5156 | 5704 | 0 | 0 | 549 | |
SQA007000 | 3D | 5705 | 7084 | 0 | 0 | 1380 | |
SQA007001 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
SQA007002 | CDS | 611 | 7087 | 0 | 0 | 6477 | |
SQA007003 | VP4/2 | 611 | 1045 | 0 | 0 | 435 | |
SQA007004 | genome | 1 | 7133 | 0 | 0 | 7133 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA001295 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
SPA001296 | 3D | 1699 | 2158 | 0 | 0 | 460 | |
SPA001297 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
SPA001298 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
SPA001299 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
SPA001300 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
SPA001301 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
SPA001302 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
SPA001303 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
SPA001304 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
SPA001305 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA001306 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA001307 | CDS | 1 | 2158 | 0 | 0 | 2158 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |