| RVdb StrainID | ANC07939 | GenBank Accession | FJ445139.1 |
| Species | RVA | Sequence Length | 7133 nt |
| Serotype | 54 Checked by RVdb | Serotype (GenBank) | 54 |
| Definition | Human rhinovirus 54 isolate F05, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | F05 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 185914 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006957 | 1A (VP4) | 611 | 817 | 0 | 0 | 207 | |
| SQA006958 | 1B (VP2) | 818 | 1612 | 0 | 0 | 795 | |
| SQA006959 | 1C (VP3) | 1613 | 2326 | 0 | 0 | 714 | |
| SQA006960 | 1D (VP1) | 2327 | 3184 | 0 | 0 | 858 | |
| SQA006961 | 2A (P2-A) | 3185 | 3610 | 0 | 0 | 426 | |
| SQA006962 | 2B (P2-B) | 3611 | 3895 | 0 | 0 | 285 | |
| SQA006963 | 2C (P2-C) | 3896 | 4861 | 0 | 0 | 966 | |
| SQA006964 | 3'UTR | 7088 | 7133 | 0 | 0 | 46 | |
| SQA006965 | 3A (P3-A) | 4862 | 5092 | 0 | 0 | 231 | |
| SQA006966 | 3B (VPg) | 5093 | 5155 | 0 | 0 | 63 | |
| SQA006967 | protease 3C | 5156 | 5704 | 0 | 0 | 549 | |
| SQA006968 | 3D | 5705 | 7084 | 0 | 0 | 1380 | |
| SQA006969 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
| SQA006970 | CDS | 611 | 7087 | 0 | 0 | 6477 | |
| SQA006971 | VP4/2 | 611 | 1045 | 0 | 0 | 435 | |
| SQA006972 | genome | 1 | 7133 | 0 | 0 | 7133 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001425 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA001426 | 3D | 1699 | 2158 | 0 | 0 | 460 | |
| SPA001427 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA001428 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA001429 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA001430 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA001431 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA001432 | 1D (VP1) | 573 | 858 | 0 | 0 | 286 | |
| SPA001433 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA001434 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA001435 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001436 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001437 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |