| RVdb StrainID | ANC07409 | GenBank Accession | JF285313.1 |
| Species | RVA | Sequence Length | 6891 nt |
| Serotype | 9 Checked by RVdb | Serotype (GenBank) | 9 |
| Definition | Human rhinovirus A isolate F78_LRT-27.4m polyprotein gene, partial cds | GenBank Submission Date | 2016-07-25 |
| Strain Name | F78_LRT-27.4m | Sampling Date | 2008-10-04 |
| Sampling Country | Switzerland | Sampling location | Geneva |
| Isolation Source | bronchoalveolar lavage | NCBI Taxon ID | 147711 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006604 | 1A (VP4) | 505 | 711 | 0 | 0 | 207 | |
| SQA006605 | 1B (VP2) | 712 | 1497 | 0 | 0 | 786 | |
| SQA006606 | 1C (VP3) | 1498 | 2211 | 0 | 0 | 714 | |
| SQA006607 | 1D (VP1) | 2212 | 3078 | 0 | 0 | 867 | |
| SQA006608 | 2A (P2-A) | 3079 | 3504 | 0 | 0 | 426 | |
| SQA006609 | 2B (P2-B) | 3505 | 3789 | 0 | 0 | 285 | |
| SQA006610 | 2C (P2-C) | 3790 | 4755 | 0 | 0 | 966 | |
| SQA006611 | 3A (P3-A) | 4756 | 4986 | 0 | 0 | 231 | |
| SQA006612 | 3B (VPg) | 4987 | 5049 | 0 | 0 | 63 | |
| SQA006613 | protease 3C | 5050 | 5598 | 0 | 0 | 549 | |
| SQA006614 | 3D | 5599 | 6891 | 0 | 1 | 1293 | |
| SQA006615 | 5'UTR | 1 | 504 | 1 | 0 | 504 | |
| SQA006616 | CDS | 505 | 6891 | 0 | 1 | 6387 | |
| SQA006617 | VP4/2 | 505 | 939 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA002637 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA002638 | 3D | 1699 | 2129 | 0 | 1 | 431 | |
| SPA002639 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA002640 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA002641 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA002642 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA002643 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA002644 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA002645 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA002646 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA002647 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA002648 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA002649 | CDS | 1 | 2129 | 0 | 0 | 2129 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 21713005 | Rhinovirus genome variation during chronic upper and lower respiratory tract infections. | 2011 | PLoS One | View More |