| RVdb StrainID | ANC07399 | GenBank Accession | JF285323.1 |
| Species | RVA | Sequence Length | 7093 nt |
| Serotype | 64 Checked by RVdb | Serotype (GenBank) | 64 |
| Definition | Human rhinovirus A isolate P37_URT_LCT-15d polyprotein gene, complete cds | GenBank Submission Date | 2014-01-31 |
| Strain Name | P37_URT_LCT-15d | Sampling Date | 2001-02-08 |
| Sampling Country | Switzerland | Sampling location | Geneva |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 147711 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006574 | 1A (VP4) | 594 | 800 | 0 | 0 | 207 | |
| SQA006575 | 1B (VP2) | 801 | 1583 | 0 | 0 | 783 | |
| SQA006576 | 1C (VP3) | 1584 | 2294 | 0 | 0 | 711 | |
| SQA006577 | 1D (VP1) | 2295 | 3161 | 0 | 0 | 867 | |
| SQA006578 | 2A (P2-A) | 3162 | 3587 | 0 | 0 | 426 | |
| SQA006579 | 2B (P2-B) | 3588 | 3872 | 0 | 0 | 285 | |
| SQA006580 | 2C (P2-C) | 3873 | 4838 | 0 | 0 | 966 | |
| SQA006581 | 3'UTR | 7065 | 7093 | 0 | 1 | 29 | |
| SQA006582 | 3A (P3-A) | 4839 | 5069 | 0 | 0 | 231 | |
| SQA006583 | 3B (VPg) | 5070 | 5132 | 0 | 0 | 63 | |
| SQA006584 | protease 3C | 5133 | 5681 | 0 | 0 | 549 | |
| SQA006585 | 3D | 5682 | 7061 | 0 | 0 | 1380 | |
| SQA006586 | 5'UTR | 1 | 593 | 1 | 0 | 593 | |
| SQA006587 | CDS | 594 | 7064 | 0 | 0 | 6471 | |
| SQA006588 | VP4/2 | 594 | 1028 | 0 | 0 | 435 | |
| SQA006589 | genome | 1 | 7093 | 1 | 1 | 7093 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA002767 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA002768 | 3D | 1697 | 2156 | 0 | 0 | 460 | |
| SPA002769 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA002770 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA002771 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA002772 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA002773 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA002774 | 1D (VP1) | 568 | 856 | 0 | 0 | 289 | |
| SPA002775 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA002776 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA002777 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA002778 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA002779 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 21713005 | Rhinovirus genome variation during chronic upper and lower respiratory tract infections. | 2011 | PLoS One | View More |