| RVdb StrainID | ANC07394 | GenBank Accession | JF285328.1 |
| Species | RVA | Sequence Length | 7043 nt |
| Serotype | 24 Checked by RVdb | Serotype (GenBank) | 24 |
| Definition | Human rhinovirus A isolate R58_LRT-7d polyprotein gene, partial cds | GenBank Submission Date | 2016-07-25 |
| Strain Name | R58_LRT-7d | Sampling Date | 2004-01-20 |
| Sampling Country | Switzerland | Sampling location | Geneva |
| Isolation Source | bronchoalveolar lavage | NCBI Taxon ID | 147711 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006560 | 1A (VP4) | 607 | 813 | 0 | 0 | 207 | |
| SQA006561 | 1B (VP2) | 814 | 1599 | 0 | 0 | 786 | |
| SQA006562 | 1C (VP3) | 1600 | 2313 | 0 | 0 | 714 | |
| SQA006563 | 1D (VP1) | 2314 | 3168 | 0 | 0 | 855 | |
| SQA006564 | 2A (P2-A) | 3169 | 3594 | 0 | 0 | 426 | |
| SQA006565 | 2B (P2-B) | 3595 | 3879 | 0 | 0 | 285 | |
| SQA006566 | 2C (P2-C) | 3880 | 4845 | 0 | 0 | 966 | |
| SQA006567 | 3A (P3-A) | 4846 | 5076 | 0 | 0 | 231 | |
| SQA006568 | 3B (VPg) | 5077 | 5139 | 0 | 0 | 63 | |
| SQA006569 | protease 3C | 5140 | 5688 | 0 | 0 | 549 | |
| SQA006570 | 3D | 5689 | 7043 | 0 | 1 | 1355 | |
| SQA006571 | 5'UTR | 1 | 606 | 1 | 0 | 606 | |
| SQA006572 | CDS | 607 | 7043 | 0 | 1 | 6437 | |
| SQA006573 | VP4/2 | 607 | 1041 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA002832 | protease 3C | 1512 | 1694 | 0 | 0 | 183 | |
| SPA002833 | 3D | 1695 | 2142 | 0 | 0 | 448 | |
| SPA002834 | 3B (VPg) | 1491 | 1511 | 0 | 0 | 21 | |
| SPA002835 | 3A (P3-A) | 1414 | 1490 | 0 | 0 | 77 | |
| SPA002836 | 2C (P2-C) | 1092 | 1413 | 0 | 0 | 322 | |
| SPA002837 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA002838 | 2A (P2-A) | 855 | 996 | 0 | 0 | 142 | |
| SPA002839 | 1D (VP1) | 570 | 854 | 0 | 0 | 285 | |
| SPA002840 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA002841 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA002842 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA002843 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA002844 | CDS | 1 | 2146 | 0 | 0 | 2146 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 21713005 | Rhinovirus genome variation during chronic upper and lower respiratory tract infections. | 2011 | PLoS One | View More |