| RVdb StrainID | ANC07239 | GenBank Accession | JF781503.1 |
| Species | RVA | Sequence Length | 6774 nt |
| Serotype | 75 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A75_p1095_sR573_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A75_p1095_sR573_2008 | Sampling Date | 2008-09-13 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006487 | 1A (VP4) | 481 | 687 | 0 | 0 | 207 | |
| SQA006488 | 1B (VP2) | 688 | 1473 | 0 | 0 | 786 | |
| SQA006489 | 1C (VP3) | 1474 | 2187 | 0 | 0 | 714 | |
| SQA006490 | 1D (VP1) | 2188 | 3054 | 0 | 0 | 867 | |
| SQA006491 | 2A (P2-A) | 3055 | 3480 | 0 | 0 | 426 | |
| SQA006492 | 2B (P2-B) | 3481 | 3765 | 0 | 0 | 285 | |
| SQA006493 | 2C (P2-C) | 3766 | 4731 | 0 | 0 | 966 | |
| SQA006494 | 3A (P3-A) | 4732 | 4962 | 0 | 0 | 231 | |
| SQA006495 | 3B (VPg) | 4963 | 5025 | 0 | 0 | 63 | |
| SQA006496 | protease 3C | 5026 | 5574 | 0 | 0 | 549 | |
| SQA006497 | 3D | 5575 | 6774 | 0 | 1 | 1200 | |
| SQA006498 | 5'UTR | 1 | 480 | 1 | 0 | 480 | |
| SQA006499 | CDS | 481 | 6774 | 0 | 1 | 6294 | |
| SQA006500 | VP4/2 | 481 | 915 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003063 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA003064 | 3D | 1699 | 2098 | 0 | 1 | 400 | |
| SPA003065 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA003066 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA003067 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA003068 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003069 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA003070 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA003071 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003072 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003073 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003074 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003075 | CDS | 1 | 2098 | 0 | 0 | 2098 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |