| RVdb StrainID | ANC07234 | GenBank Accession | JF781512.1 |
| Species | RVA | Sequence Length | 6761 nt |
| Serotype | 34 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A34_p1058_sR263_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A34_p1058_sR263_2008 | Sampling Date | 2008-04-26 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006473 | 1A (VP4) | 323 | 529 | 0 | 0 | 207 | |
| SQA006474 | 1B (VP2) | 530 | 1306 | 0 | 0 | 777 | |
| SQA006475 | 1C (VP3) | 1307 | 1999 | 0 | 0 | 693 | |
| SQA006476 | 1D (VP1) | 2000 | 2881 | 0 | 0 | 882 | |
| SQA006477 | 2A (P2-A) | 2882 | 2935 | 0 | 1 | 54 | |
| SQA006478 | 2B (P2-B) | 3329 | 3592 | 1 | 0 | 264 | |
| SQA006479 | 2C (P2-C) | 3593 | 4558 | 0 | 0 | 966 | |
| SQA006480 | 3A (P3-A) | 4559 | 4789 | 0 | 0 | 231 | |
| SQA006481 | 3B (VPg) | 4790 | 4852 | 0 | 0 | 63 | |
| SQA006482 | protease 3C | 4853 | 5401 | 0 | 0 | 549 | |
| SQA006483 | 3D | 5402 | 6761 | 0 | 1 | 1360 | |
| SQA006484 | 5'UTR | 1 | 322 | 1 | 0 | 322 | |
| SQA006485 | CDS | 323 | 6761 | 0 | 1 | 6439 | |
| SQA006486 | VP4/2 | 323 | 757 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003115 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA003116 | 3D | 1694 | 2146 | 0 | 1 | 453 | |
| SPA003117 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA003118 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA003119 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA003120 | 2B (P2-B) | 1003 | 1090 | 1 | 0 | 88 | |
| SPA003121 | 2A (P2-A) | 854 | 871 | 0 | 1 | 18 | |
| SPA003122 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPA003123 | 1C (VP3) | 329 | 557 | 0 | 1 | 229 | |
| SPA003124 | 1B (VP2) | 70 | 328 | 0 | 0 | 259 | |
| SPA003125 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003126 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003127 | CDS | 1 | 2146 | 0 | 0 | 2146 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |