| RVdb StrainID | ANC07229 | GenBank Accession | JN541269.1 |
| Species | RVA | Sequence Length | 7192 nt |
| Serotype | 10 Checked by RVdb | Serotype (GenBank) | 10 |
| Definition | Human rhinovirus A strain HRV-A10_p1038_sR155_2007 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A10_p1038_sR155_2007 | Sampling Date | 2007-09-22 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006457 | 1A (VP4) | 684 | 890 | 0 | 0 | 207 | |
| SQA006458 | 1B (VP2) | 891 | 1685 | 0 | 0 | 795 | |
| SQA006459 | 1C (VP3) | 1686 | 2399 | 0 | 0 | 714 | |
| SQA006460 | 1D (VP1) | 2400 | 3263 | 0 | 0 | 864 | |
| SQA006461 | 2A (P2-A) | 3264 | 3689 | 0 | 0 | 426 | |
| SQA006462 | 2B (P2-B) | 3690 | 3974 | 0 | 0 | 285 | |
| SQA006463 | 2C (P2-C) | 3975 | 4940 | 0 | 0 | 966 | |
| SQA006464 | 3'UTR | 7167 | 7192 | 0 | 1 | 26 | |
| SQA006465 | 3A (P3-A) | 4941 | 5171 | 0 | 0 | 231 | |
| SQA006466 | 3B (VPg) | 5172 | 5234 | 0 | 0 | 63 | |
| SQA006467 | protease 3C | 5235 | 5783 | 0 | 0 | 549 | |
| SQA006468 | 3D | 5784 | 7163 | 0 | 0 | 1380 | |
| SQA006469 | 5'UTR | 1 | 683 | 0 | 0 | 683 | |
| SQA006470 | CDS | 684 | 7166 | 0 | 0 | 6483 | |
| SQA006471 | VP4/2 | 684 | 1118 | 0 | 0 | 435 | |
| SQA006472 | genome | 1 | 7192 | 0 | 1 | 7192 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003393 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA003394 | 3D | 1701 | 2160 | 0 | 0 | 460 | |
| SPA003395 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA003396 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA003397 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA003398 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA003399 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA003400 | 1D (VP1) | 573 | 860 | 0 | 0 | 288 | |
| SPA003401 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA003402 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA003403 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003404 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003405 | CDS | 1 | 2160 | 0 | 0 | 2160 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |