| RVdb StrainID | ANC07224 | GenBank Accession | JN562725.1 |
| Species | RVA | Sequence Length | 6769 nt |
| Serotype | 51 Checked by RVdb | Serotype (GenBank) | 51 |
| Definition | Human rhinovirus A strain HRV-A51_p1026_sR2638_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A51_p1026_sR2638_2009 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006443 | 1A (VP4) | 307 | 513 | 0 | 0 | 207 | |
| SQA006444 | 1B (VP2) | 514 | 1302 | 0 | 0 | 789 | |
| SQA006445 | 1C (VP3) | 1303 | 2016 | 0 | 0 | 714 | |
| SQA006446 | 1D (VP1) | 2017 | 2904 | 0 | 0 | 888 | |
| SQA006447 | 2A (P2-A) | 2905 | 3333 | 0 | 0 | 429 | |
| SQA006448 | 2B (P2-B) | 3334 | 3618 | 0 | 0 | 285 | |
| SQA006449 | 2C (P2-C) | 3619 | 4581 | 0 | 0 | 963 | |
| SQA006450 | 3A (P3-A) | 4582 | 4815 | 0 | 0 | 234 | |
| SQA006451 | 3B (VPg) | 4816 | 4878 | 0 | 0 | 63 | |
| SQA006452 | protease 3C | 4879 | 5427 | 0 | 0 | 549 | |
| SQA006453 | 3D | 5428 | 6769 | 0 | 1 | 1342 | |
| SQA006454 | 5'UTR | 1 | 306 | 1 | 0 | 306 | |
| SQA006455 | CDS | 307 | 6769 | 0 | 1 | 6463 | |
| SQA006456 | VP4/2 | 307 | 741 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003458 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
| SPA003459 | 3D | 1708 | 2154 | 0 | 1 | 447 | |
| SPA003460 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
| SPA003461 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
| SPA003462 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA003463 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA003464 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
| SPA003465 | 1D (VP1) | 571 | 866 | 0 | 0 | 296 | |
| SPA003466 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003467 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003468 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003469 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003470 | CDS | 1 | 2154 | 0 | 0 | 2154 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |