| RVdb StrainID | ANC07219 | GenBank Accession | JN614995.1 |
| Species | RVA | Sequence Length | 6709 nt |
| Serotype | 105 Corrected by RVdb | Serotype (GenBank) | 57 |
| Definition | Human rhinovirus A strain HRV-A57_p1064_sR985_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A57_p1064_sR985_2009 | Sampling Date | 2009-12-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006429 | 1A (VP4) | 545 | 751 | 0 | 0 | 207 | |
| SQA006430 | 1B (VP2) | 752 | 1534 | 0 | 0 | 783 | |
| SQA006431 | 1C (VP3) | 1535 | 2248 | 0 | 0 | 714 | |
| SQA006432 | 1D (VP1) | 2249 | 3112 | 0 | 0 | 864 | |
| SQA006433 | 2A (P2-A) | 3113 | 3538 | 0 | 0 | 426 | |
| SQA006434 | 2B (P2-B) | 3539 | 3823 | 0 | 0 | 285 | |
| SQA006435 | 2C (P2-C) | 3824 | 4789 | 0 | 0 | 966 | |
| SQA006436 | 3A (P3-A) | 4790 | 5020 | 0 | 0 | 231 | |
| SQA006437 | 3B (VPg) | 5021 | 5083 | 0 | 0 | 63 | |
| SQA006438 | protease 3C | 5084 | 5647 | 0 | 0 | 564 | |
| SQA006439 | 3D | 5648 | 6709 | 0 | 1 | 1062 | |
| SQA006440 | 5'UTR | 1 | 544 | 1 | 0 | 544 | |
| SQA006441 | CDS | 545 | 6709 | 0 | 1 | 6165 | |
| SQA006442 | VP4/2 | 545 | 979 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003523 | protease 3C | 1514 | 1701 | 0 | 0 | 188 | |
| SPA003524 | 3D | 1702 | 2055 | 0 | 1 | 354 | |
| SPA003525 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA003526 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA003527 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA003528 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA003529 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA003530 | 1D (VP1) | 569 | 856 | 0 | 0 | 288 | |
| SPA003531 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA003532 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003533 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003534 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003535 | CDS | 1 | 2055 | 0 | 0 | 2055 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |