| RVdb StrainID | ANC07214 | GenBank Accession | JN621246.1 |
| Species | RVA | Sequence Length | 6492 nt |
| Serotype | 66 Checked by RVdb | Serotype (GenBank) | 66 |
| Definition | Human rhinovirus A strain HRV-A66_p1038_sR151_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A66_p1038_sR151_2008 | Sampling Date | 2008-03-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006416 | 1A (VP4) | 230 | 436 | 0 | 0 | 207 | |
| SQA006417 | 1B (VP2) | 437 | 1225 | 0 | 0 | 789 | |
| SQA006418 | 1C (VP3) | 1226 | 1939 | 0 | 0 | 714 | |
| SQA006419 | 1D (VP1) | 1940 | 2803 | 0 | 0 | 864 | |
| SQA006420 | 2A (P2-A) | 2804 | 3229 | 0 | 0 | 426 | |
| SQA006421 | 2B (P2-B) | 3230 | 3514 | 0 | 0 | 285 | |
| SQA006422 | 2C (P2-C) | 3515 | 4480 | 0 | 0 | 966 | |
| SQA006423 | 3A (P3-A) | 4481 | 4711 | 0 | 0 | 231 | |
| SQA006424 | 3B (VPg) | 4712 | 4774 | 0 | 0 | 63 | |
| SQA006425 | protease 3C | 4775 | 5323 | 0 | 0 | 549 | |
| SQA006426 | 3D | 5324 | 6492 | 0 | 1 | 1169 | |
| SQA006427 | CDS | 230 | 6492 | 0 | 1 | 6263 | |
| SQA006428 | VP4/2 | 230 | 664 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003588 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA003589 | 3D | 1699 | 2088 | 0 | 1 | 390 | |
| SPA003590 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA003591 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA003592 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA003593 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003594 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA003595 | 1D (VP1) | 571 | 858 | 0 | 0 | 288 | |
| SPA003596 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003597 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003598 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003599 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003600 | CDS | 1 | 2088 | 0 | 0 | 2088 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |