| RVdb StrainID | ANC07174 | GenBank Accession | JN798558.1 |
| Species | RVA | Sequence Length | 6551 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Human rhinovirus A strain HRV-A01_p1001_sR5_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A01_p1001_sR5_2008 | Sampling Date | 2008-03-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006381 | 1A (VP4) | 397 | 603 | 0 | 0 | 207 | |
| SQA006382 | 1B (VP2) | 604 | 1392 | 0 | 0 | 789 | |
| SQA006383 | 1C (VP3) | 1393 | 2106 | 0 | 0 | 714 | |
| SQA006384 | 1D (VP1) | 2107 | 2967 | 0 | 0 | 861 | |
| SQA006385 | 2A (P2-A) | 2968 | 3390 | 0 | 0 | 423 | |
| SQA006386 | 2B (P2-B) | 3391 | 3675 | 0 | 0 | 285 | |
| SQA006387 | 2C (P2-C) | 3676 | 4641 | 0 | 0 | 966 | |
| SQA006388 | 3A (P3-A) | 4642 | 4872 | 0 | 0 | 231 | |
| SQA006389 | 3B (VPg) | 4873 | 4935 | 0 | 0 | 63 | |
| SQA006390 | protease 3C | 4936 | 5484 | 0 | 0 | 549 | |
| SQA006391 | 3D | 5485 | 6551 | 0 | 1 | 1067 | |
| SQA006392 | 5'UTR | 1 | 396 | 1 | 0 | 396 | |
| SQA006393 | CDS | 397 | 6551 | 0 | 1 | 6155 | |
| SQA006394 | VP4/2 | 397 | 831 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003627 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA003628 | 3D | 1697 | 2052 | 0 | 1 | 356 | |
| SPA003629 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA003630 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA003631 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA003632 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA003633 | 2A (P2-A) | 858 | 998 | 0 | 0 | 141 | |
| SPA003634 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA003635 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003636 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003637 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003638 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003639 | CDS | 1 | 2052 | 0 | 0 | 2052 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |