| RVdb StrainID | ANC07169 | GenBank Accession | JN798571.1 |
| Species | RVA | Sequence Length | 6593 nt |
| Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
| Definition | Human rhinovirus A strain HRV-A20_p1220_sR1437_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A20_p1220_sR1437_2009 | Sampling Date | 2009-02-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006367 | 1A (VP4) | 349 | 555 | 0 | 0 | 207 | |
| SQA006368 | 1B (VP2) | 556 | 1341 | 0 | 0 | 786 | |
| SQA006369 | 1C (VP3) | 1342 | 2055 | 0 | 0 | 714 | |
| SQA006370 | 1D (VP1) | 2056 | 2946 | 0 | 0 | 891 | |
| SQA006371 | 2A (P2-A) | 2947 | 3375 | 0 | 0 | 429 | |
| SQA006372 | 2B (P2-B) | 3376 | 3660 | 0 | 0 | 285 | |
| SQA006373 | 2C (P2-C) | 3661 | 4623 | 0 | 0 | 963 | |
| SQA006374 | 3A (P3-A) | 4624 | 4857 | 0 | 0 | 234 | |
| SQA006375 | 3B (VPg) | 4858 | 4920 | 0 | 0 | 63 | |
| SQA006376 | protease 3C | 4921 | 5469 | 0 | 0 | 549 | |
| SQA006377 | 3D | 5470 | 6593 | 0 | 1 | 1124 | |
| SQA006378 | 5'UTR | 1 | 348 | 1 | 0 | 348 | |
| SQA006379 | CDS | 349 | 6593 | 0 | 1 | 6245 | |
| SQA006380 | VP4/2 | 349 | 783 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003692 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
| SPA003693 | 3D | 1708 | 2082 | 0 | 1 | 375 | |
| SPA003694 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
| SPA003695 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
| SPA003696 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA003697 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA003698 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
| SPA003699 | 1D (VP1) | 570 | 866 | 0 | 0 | 297 | |
| SPA003700 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003701 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003702 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003703 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003704 | CDS | 1 | 2082 | 0 | 0 | 2082 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |