| RVdb StrainID | ANC07164 | GenBank Accession | JN798578.1 |
| Species | RVA | Sequence Length | 6622 nt |
| Serotype | 68 Checked by RVdb | Serotype (GenBank) | 68 |
| Definition | Human rhinovirus A strain HRV-A68_p1161_sR2885_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A68_p1161_sR2885_2009 | Sampling Date | 2009-11-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006353 | 1A (VP4) | 556 | 762 | 0 | 0 | 207 | |
| SQA006354 | 1B (VP2) | 763 | 1548 | 0 | 0 | 786 | |
| SQA006355 | 1C (VP3) | 1549 | 2262 | 0 | 0 | 714 | |
| SQA006356 | 1D (VP1) | 2263 | 3153 | 0 | 0 | 891 | |
| SQA006357 | 2A (P2-A) | 3154 | 3582 | 0 | 0 | 429 | |
| SQA006358 | 2B (P2-B) | 3583 | 3867 | 0 | 0 | 285 | |
| SQA006359 | 2C (P2-C) | 3868 | 4830 | 0 | 0 | 963 | |
| SQA006360 | 3A (P3-A) | 4831 | 5064 | 0 | 0 | 234 | |
| SQA006361 | 3B (VPg) | 5065 | 5127 | 0 | 0 | 63 | |
| SQA006362 | protease 3C | 5128 | 5676 | 0 | 0 | 549 | |
| SQA006363 | 3D | 5677 | 6622 | 0 | 1 | 946 | |
| SQA006364 | 5'UTR | 1 | 555 | 1 | 0 | 555 | |
| SQA006365 | CDS | 556 | 6622 | 0 | 1 | 6067 | |
| SQA006366 | VP4/2 | 556 | 990 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003757 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
| SPA003758 | 3D | 1708 | 2022 | 0 | 1 | 315 | |
| SPA003759 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
| SPA003760 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
| SPA003761 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA003762 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA003763 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
| SPA003764 | 1D (VP1) | 570 | 866 | 0 | 0 | 297 | |
| SPA003765 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003766 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003767 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003768 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003769 | CDS | 1 | 2022 | 0 | 0 | 2022 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |