| RVdb StrainID | ANC07159 | GenBank Accession | JN798584.1 |
| Species | RVA | Sequence Length | 6960 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1126_sR1020_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1126_sR1020_2009 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006339 | 1A (VP4) | 530 | 736 | 0 | 0 | 207 | |
| SQA006340 | 1B (VP2) | 737 | 1537 | 0 | 0 | 801 | |
| SQA006341 | 1C (VP3) | 1538 | 2251 | 0 | 0 | 714 | |
| SQA006342 | 1D (VP1) | 2252 | 3118 | 0 | 0 | 867 | |
| SQA006343 | 2A (P2-A) | 3119 | 3544 | 0 | 0 | 426 | |
| SQA006344 | 2B (P2-B) | 3545 | 3829 | 0 | 0 | 285 | |
| SQA006345 | 2C (P2-C) | 3830 | 4792 | 0 | 0 | 963 | |
| SQA006346 | 3A (P3-A) | 4793 | 5020 | 0 | 0 | 228 | |
| SQA006347 | 3B (VPg) | 5021 | 5083 | 0 | 0 | 63 | |
| SQA006348 | protease 3C | 5084 | 5632 | 0 | 0 | 549 | |
| SQA006349 | 3D | 5633 | 6960 | 0 | 1 | 1328 | |
| SQA006350 | 5'UTR | 1 | 529 | 1 | 0 | 529 | |
| SQA006351 | CDS | 530 | 6960 | 0 | 1 | 6431 | |
| SQA006352 | VP4/2 | 530 | 964 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003822 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003823 | 3D | 1702 | 2144 | 0 | 1 | 443 | |
| SPA003824 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003825 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA003826 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA003827 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA003828 | 2A (P2-A) | 864 | 1005 | 0 | 0 | 142 | |
| SPA003829 | 1D (VP1) | 575 | 863 | 0 | 0 | 289 | |
| SPA003830 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA003831 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA003832 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003833 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003834 | CDS | 1 | 2144 | 0 | 0 | 2144 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |