| RVdb StrainID | ANC07154 | GenBank Accession | JN798590.1 |
| Species | RVA | Sequence Length | 6881 nt |
| Serotype | 60 Checked by RVdb | Serotype (GenBank) | 60 |
| Definition | Human rhinovirus A strain HRV-A60_p1057_sR258_2007 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A60_p1057_sR258_2007 | Sampling Date | 2007-09-22 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006325 | 1A (VP4) | 405 | 611 | 0 | 0 | 207 | |
| SQA006326 | 1B (VP2) | 612 | 1370 | 0 | 1 | 759 | |
| SQA006327 | 1C (VP3) | 1464 | 2111 | 1 | 0 | 648 | |
| SQA006328 | 1D (VP1) | 2112 | 2981 | 0 | 0 | 870 | |
| SQA006329 | 2A (P2-A) | 2982 | 3413 | 0 | 0 | 432 | |
| SQA006330 | 2B (P2-B) | 3414 | 3692 | 0 | 0 | 279 | |
| SQA006331 | 2C (P2-C) | 3693 | 4658 | 0 | 0 | 966 | |
| SQA006332 | 3A (P3-A) | 4659 | 4889 | 0 | 0 | 231 | |
| SQA006333 | 3B (VPg) | 4890 | 4952 | 0 | 0 | 63 | |
| SQA006334 | protease 3C | 4953 | 5501 | 0 | 0 | 549 | |
| SQA006335 | 3D | 5502 | 6881 | 0 | 1 | 1380 | |
| SQA006336 | 5'UTR | 1 | 404 | 1 | 0 | 404 | |
| SQA006337 | CDS | 405 | 6881 | 0 | 1 | 6477 | |
| SQA006338 | VP4/2 | 405 | 839 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003887 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA003888 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA003889 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA003890 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA003891 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA003892 | 2B (P2-B) | 1015 | 1096 | 1 | 0 | 82 | |
| SPA003893 | 2A (P2-A) | 860 | 934 | 0 | 1 | 75 | |
| SPA003894 | 1D (VP1) | 570 | 859 | 0 | 0 | 290 | |
| SPA003895 | 1C (VP3) | 354 | 569 | 1 | 0 | 216 | |
| SPA003896 | 1B (VP2) | 70 | 322 | 0 | 1 | 253 | |
| SPA003897 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003898 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003899 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |