| RVdb StrainID | ANC07149 | GenBank Accession | JN815246.1 |
| Species | RVA | Sequence Length | 6978 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1148_sR1495_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1148_sR1495_2009 | Sampling Date | 2009-04-18 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006311 | 1A (VP4) | 547 | 753 | 0 | 0 | 207 | |
| SQA006312 | 1B (VP2) | 754 | 1554 | 0 | 0 | 801 | |
| SQA006313 | 1C (VP3) | 1555 | 2268 | 0 | 0 | 714 | |
| SQA006314 | 1D (VP1) | 2269 | 3135 | 0 | 0 | 867 | |
| SQA006315 | 2A (P2-A) | 3136 | 3561 | 0 | 0 | 426 | |
| SQA006316 | 2B (P2-B) | 3562 | 3846 | 0 | 0 | 285 | |
| SQA006317 | 2C (P2-C) | 3847 | 4809 | 0 | 0 | 963 | |
| SQA006318 | 3A (P3-A) | 4810 | 5037 | 0 | 0 | 228 | |
| SQA006319 | 3B (VPg) | 5038 | 5100 | 0 | 0 | 63 | |
| SQA006320 | protease 3C | 5101 | 5649 | 0 | 0 | 549 | |
| SQA006321 | 3D | 5650 | 6978 | 0 | 1 | 1329 | |
| SQA006322 | 5'UTR | 1 | 546 | 1 | 0 | 546 | |
| SQA006323 | CDS | 547 | 6978 | 0 | 1 | 6432 | |
| SQA006324 | VP4/2 | 547 | 981 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004030 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA004031 | 3D | 1702 | 2144 | 0 | 1 | 443 | |
| SPA004032 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA004033 | 3A (P3-A) | 1422 | 1497 | 0 | 0 | 76 | |
| SPA004034 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA004035 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA004036 | 2A (P2-A) | 864 | 1005 | 0 | 0 | 142 | |
| SPA004037 | 1D (VP1) | 575 | 863 | 0 | 0 | 289 | |
| SPA004038 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA004039 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA004040 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004041 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004042 | CDS | 1 | 2144 | 0 | 0 | 2144 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |