| RVdb StrainID | ANC07144 | GenBank Accession | JN815254.1 |
| Species | RVA | Sequence Length | 6713 nt |
| Serotype | 23 Checked by RVdb | Serotype (GenBank) | 23 |
| Definition | Human rhinovirus A strain HRV-A23_p1162_sR1549_2009_g2 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A23_p1162_sR1549_2009_g2 | Sampling Date | 2009-09-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006297 | 1A (VP4) | 535 | 741 | 0 | 0 | 207 | |
| SQA006298 | 1B (VP2) | 742 | 1524 | 0 | 0 | 783 | |
| SQA006299 | 1C (VP3) | 1525 | 2232 | 0 | 0 | 708 | |
| SQA006300 | 1D (VP1) | 2233 | 3081 | 0 | 0 | 849 | |
| SQA006301 | 2A (P2-A) | 3082 | 3507 | 0 | 0 | 426 | |
| SQA006302 | 2B (P2-B) | 3508 | 3792 | 0 | 0 | 285 | |
| SQA006303 | 2C (P2-C) | 3793 | 4758 | 0 | 0 | 966 | |
| SQA006304 | 3A (P3-A) | 4759 | 4989 | 0 | 0 | 231 | |
| SQA006305 | 3B (VPg) | 4990 | 5052 | 0 | 0 | 63 | |
| SQA006306 | protease 3C | 5053 | 5601 | 0 | 0 | 549 | |
| SQA006307 | 3D | 5602 | 6713 | 0 | 1 | 1112 | |
| SQA006308 | 5'UTR | 1 | 534 | 1 | 0 | 534 | |
| SQA006309 | CDS | 535 | 6713 | 0 | 1 | 6179 | |
| SQA006310 | VP4/2 | 535 | 969 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004095 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPA004096 | 3D | 1690 | 2060 | 0 | 1 | 371 | |
| SPA004097 | 3B (VPg) | 1486 | 1506 | 0 | 0 | 21 | |
| SPA004098 | 3A (P3-A) | 1409 | 1485 | 0 | 0 | 77 | |
| SPA004099 | 2C (P2-C) | 1087 | 1408 | 0 | 0 | 322 | |
| SPA004100 | 2B (P2-B) | 992 | 1086 | 0 | 0 | 95 | |
| SPA004101 | 2A (P2-A) | 850 | 991 | 0 | 0 | 142 | |
| SPA004102 | 1D (VP1) | 567 | 849 | 0 | 0 | 283 | |
| SPA004103 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPA004104 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004105 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004106 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004107 | CDS | 1 | 2060 | 0 | 0 | 2060 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |