| RVdb StrainID | ANC06909 | GenBank Accession | JQ245967.1 |
| Species | RVA | Sequence Length | 6576 nt |
| Serotype | 40 Checked by RVdb | Serotype (GenBank) | 40 |
| Definition | Human rhinovirus A strain HRV-A40_p1174_sR1233_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A40_p1174_sR1233_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.06 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006146 | 1A (VP4) | 219 | 425 | 0 | 0 | 207 | |
| SQA006147 | 1B (VP2) | 426 | 1223 | 0 | 0 | 798 | |
| SQA006148 | 1C (VP3) | 1224 | 1937 | 0 | 0 | 714 | |
| SQA006149 | 1D (VP1) | 1938 | 2795 | 0 | 0 | 858 | |
| SQA006150 | 2A (P2-A) | 2796 | 3221 | 0 | 0 | 426 | |
| SQA006151 | 2B (P2-B) | 3222 | 3506 | 0 | 0 | 285 | |
| SQA006152 | 2C (P2-C) | 3507 | 4472 | 0 | 0 | 966 | |
| SQA006153 | 3A (P3-A) | 4473 | 4703 | 0 | 0 | 231 | |
| SQA006154 | 3B (VPg) | 4704 | 4766 | 0 | 0 | 63 | |
| SQA006155 | protease 3C | 4767 | 5315 | 0 | 0 | 549 | |
| SQA006156 | 3D | 5316 | 6576 | 0 | 1 | 1261 | |
| SQA006157 | CDS | 219 | 6576 | 0 | 1 | 6358 | |
| SQA006158 | VP4/2 | 219 | 653 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004860 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA004861 | 3D | 1700 | 2119 | 0 | 1 | 420 | |
| SPA004862 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA004863 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA004864 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA004865 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA004866 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA004867 | 1D (VP1) | 574 | 859 | 0 | 0 | 286 | |
| SPA004868 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA004869 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA004870 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004871 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004872 | CDS | 1 | 2119 | 0 | 0 | 2119 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |