| RVdb StrainID | ANC06814 | GenBank Accession | JQ747751.1 |
| Species | RVA | Sequence Length | 6983 nt |
| Serotype | 28 Checked by RVdb | Serotype (GenBank) | 28 |
| Definition | Human rhinovirus A strain HRV-A28_p1292_s6470_2000 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A28_p1292_s6470_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006109 | 1A (VP4) | 490 | 696 | 0 | 0 | 207 | |
| SQA006110 | 1B (VP2) | 697 | 1485 | 0 | 0 | 789 | |
| SQA006111 | 1C (VP3) | 1486 | 2199 | 0 | 0 | 714 | |
| SQA006112 | 1D (VP1) | 2200 | 3078 | 0 | 0 | 879 | |
| SQA006113 | 2A (P2-A) | 3079 | 3507 | 0 | 0 | 429 | |
| SQA006114 | 2B (P2-B) | 3508 | 3792 | 0 | 0 | 285 | |
| SQA006115 | 2C (P2-C) | 3793 | 4755 | 0 | 0 | 963 | |
| SQA006116 | 3A (P3-A) | 4756 | 4989 | 0 | 0 | 234 | |
| SQA006117 | 3B (VPg) | 4990 | 5052 | 0 | 0 | 63 | |
| SQA006118 | protease 3C | 5053 | 5601 | 0 | 0 | 549 | |
| SQA006119 | 3D | 5602 | 6978 | 0 | 0 | 1377 | |
| SQA006120 | 5'UTR | 1 | 489 | 1 | 0 | 489 | |
| SQA006121 | CDS | 490 | 6981 | 0 | 0 | 6492 | |
| SQA006122 | VP4/2 | 490 | 924 | 0 | 0 | 435 | |
| SQA006123 | genome | 1 | 6983 | 1 | 1 | 6983 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004821 | protease 3C | 1522 | 1704 | 0 | 0 | 183 | |
| SPA004822 | 3D | 1705 | 2163 | 0 | 0 | 459 | |
| SPA004823 | 3B (VPg) | 1501 | 1521 | 0 | 0 | 21 | |
| SPA004824 | 3A (P3-A) | 1423 | 1500 | 0 | 0 | 78 | |
| SPA004825 | 2C (P2-C) | 1102 | 1422 | 0 | 0 | 321 | |
| SPA004826 | 2B (P2-B) | 1007 | 1101 | 0 | 0 | 95 | |
| SPA004827 | 2A (P2-A) | 864 | 1006 | 0 | 0 | 143 | |
| SPA004828 | 1D (VP1) | 571 | 863 | 0 | 0 | 293 | |
| SPA004829 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA004830 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA004831 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004832 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004833 | CDS | 1 | 2163 | 0 | 0 | 2163 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |