| RVdb StrainID | ANC06809 | GenBank Accession | JQ837722.1 |
| Species | RVA | Sequence Length | 6950 nt |
| Serotype | 82 Checked by RVdb | Serotype (GenBank) | 82 |
| Definition | Human rhinovirus A strain HRV-A82_p1126_sR1024_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A82_p1126_sR1024_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.06 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006095 | 1A (VP4) | 695 | 901 | 0 | 0 | 207 | |
| SQA006096 | 1B (VP2) | 902 | 1681 | 0 | 0 | 780 | |
| SQA006097 | 1C (VP3) | 1682 | 2392 | 0 | 0 | 711 | |
| SQA006098 | 1D (VP1) | 2393 | 3259 | 0 | 0 | 867 | |
| SQA006099 | 2A (P2-A) | 3260 | 3685 | 0 | 0 | 426 | |
| SQA006100 | 2B (P2-B) | 3686 | 3970 | 0 | 0 | 285 | |
| SQA006101 | 2C (P2-C) | 3971 | 4936 | 0 | 0 | 966 | |
| SQA006102 | 3A (P3-A) | 4937 | 5167 | 0 | 0 | 231 | |
| SQA006103 | 3B (VPg) | 5168 | 5230 | 0 | 0 | 63 | |
| SQA006104 | protease 3C | 5231 | 5779 | 0 | 0 | 549 | |
| SQA006105 | 3D | 5780 | 6950 | 0 | 1 | 1171 | |
| SQA006106 | 5'UTR | 82 | 694 | 0 | 0 | 613 | |
| SQA006107 | CDS | 695 | 6950 | 0 | 1 | 6256 | |
| SQA006108 | VP4/2 | 695 | 1129 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004974 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPA004975 | 3D | 1696 | 2085 | 0 | 1 | 390 | |
| SPA004976 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 | |
| SPA004977 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA004978 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA004979 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA004980 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA004981 | 1D (VP1) | 567 | 855 | 0 | 0 | 289 | |
| SPA004982 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPA004983 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA004984 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004985 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004986 | CDS | 1 | 2085 | 0 | 0 | 2085 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |