| RVdb StrainID | ANC06804 | GenBank Accession | JQ994496.1 |
| Species | RVA | Sequence Length | 7142 nt |
| Serotype | 38 Checked by RVdb | Serotype (GenBank) | 38 |
| Definition | Human rhinovirus A strain HRV-A38_p1266_s3799_1999 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A38_p1266_s3799_1999 | Sampling Date | 1999 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006081 | 1A (VP4) | 698 | 904 | 0 | 0 | 207 | |
| SQA006082 | 1B (VP2) | 905 | 1690 | 0 | 0 | 786 | |
| SQA006083 | 1C (VP3) | 1691 | 2404 | 0 | 0 | 714 | |
| SQA006084 | 1D (VP1) | 2405 | 3274 | 0 | 0 | 870 | |
| SQA006085 | 2A (P2-A) | 3275 | 3700 | 0 | 0 | 426 | |
| SQA006086 | 2B (P2-B) | 3701 | 3985 | 0 | 0 | 285 | |
| SQA006087 | 2C (P2-C) | 3986 | 4951 | 0 | 0 | 966 | |
| SQA006088 | 3A (P3-A) | 4952 | 5182 | 0 | 0 | 231 | |
| SQA006089 | 3B (VPg) | 5183 | 5245 | 0 | 0 | 63 | |
| SQA006090 | protease 3C | 5246 | 5794 | 0 | 0 | 549 | |
| SQA006091 | 3D | 5795 | 7142 | 0 | 1 | 1348 | |
| SQA006092 | 5'UTR | 87 | 697 | 0 | 0 | 611 | |
| SQA006093 | CDS | 698 | 7142 | 0 | 1 | 6445 | |
| SQA006094 | VP4/2 | 698 | 1132 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005013 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA005014 | 3D | 1700 | 2148 | 0 | 1 | 449 | |
| SPA005015 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA005016 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA005017 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA005018 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA005019 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA005020 | 1D (VP1) | 570 | 859 | 0 | 0 | 290 | |
| SPA005021 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA005022 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA005023 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005024 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005025 | CDS | 1 | 2148 | 0 | 0 | 2148 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |