| RVdb StrainID | ANC00009 | GenBank Accession | ON989181.1 |
| Species | RVA | Sequence Length | 2587 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus A strain RV-A11-USA-Oct-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-10-08 |
| Strain Name | RV-A11-USA-Oct-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000013 | 1A (VP4) | 90 | 296 | 0 | 0 | 207 | |
| SQA000014 | 1B (VP2) | 297 | 1076 | 0 | 0 | 780 | |
| SQA000015 | 1C (VP3) | 1077 | 1790 | 0 | 0 | 714 | |
| SQA000016 | 1D (VP1) | 1791 | 2587 | 0 | 1 | 797 | |
| SQA000017 | CDS | 90 | 2587 | 0 | 1 | 2498 | |
| SQA000018 | VP4/2 | 90 | 524 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA031898 | 1D (VP1) | 568 | 832 | 0 | 1 | 265 | |
| SPA031899 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA031900 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA031901 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA031902 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA031903 | CDS | 1 | 832 | 0 | 0 | 832 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |