| RVdb StrainID | ANC00004 | GenBank Accession | ON989192.1 |
| Species | RVA | Sequence Length | 5342 nt |
| Serotype | 23 Checked by RVdb | Serotype (GenBank) | 23 |
| Definition | Rhinovirus A strain RV-A23-USA-March-2021-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-10-08 |
| Strain Name | RV-A23-USA-March-2021-Tempe-AZ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000001 | 1A (VP4) | 41 | 247 | 0 | 0 | 207 | |
| SQA000002 | 1B (VP2) | 248 | 1030 | 0 | 0 | 783 | |
| SQA000003 | 1C (VP3) | 1031 | 1738 | 0 | 0 | 708 | |
| SQA000004 | 1D (VP1) | 1739 | 2587 | 0 | 0 | 849 | |
| SQA000005 | 2A (P2-A) | 2588 | 3013 | 0 | 0 | 426 | |
| SQA000006 | 2B (P2-B) | 3014 | 3298 | 0 | 0 | 285 | |
| SQA000007 | 2C (P2-C) | 3299 | 4264 | 0 | 0 | 966 | |
| SQA000008 | 3A (P3-A) | 4265 | 4496 | 0 | 0 | 232 | |
| SQA000009 | 3B (VPg) | 4497 | 4558 | 0 | 0 | 62 | |
| SQA000010 | protease 3C | 4559 | 5107 | 0 | 0 | 549 | |
| SQA000011 | CDS | 41 | 5342 | 0 | 1 | 5302 | |
| SQA000012 | VP4/2 | 41 | 475 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA031946 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPA031947 | 3B (VPg) | 1486 | 1506 | 0 | 0 | 21 | |
| SPA031948 | 3A (P3-A) | 1409 | 1485 | 0 | 0 | 77 | |
| SPA031949 | 2C (P2-C) | 1087 | 1408 | 0 | 0 | 322 | |
| SPA031950 | 2B (P2-B) | 992 | 1086 | 0 | 0 | 95 | |
| SPA031951 | 2A (P2-A) | 850 | 991 | 0 | 0 | 142 | |
| SPA031952 | 1D (VP1) | 567 | 849 | 0 | 0 | 283 | |
| SPA031953 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPA031954 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA031955 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA031956 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA031957 | CDS | 1 | 1767 | 0 | 0 | 1767 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |