| RVdb StrainID | CNS07293 | GenBank Accession | OP342691.1 |
| Species | RVC | Sequence Length | 7112 nt |
| Serotype | 42 Checked by RVdb | Serotype (GenBank) | 42 |
| Definition | Rhinovirus C42 strain RVC42/China/2014/HBH13 polyprotein gene, complete cds | GenBank Submission Date | 2022-12-13 |
| Strain Name | RVC42/China/2014/HBH13 | Sampling Date | 2014-04-22 |
| Sampling Country | China | Sampling location | Hebei |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219407 |
| Sequencing Technology | Illumina | Assembly Method | Geneious Prime v. 2022.1.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC023327 | 3'UTR | 7079 | 7112 | 0 | 0 | 34 | |
| SQC023328 | 5'UTR | 1 | 619 | 0 | 0 | 619 | |
| SQC023329 | CDS | 620 | 7078 | 0 | 0 | 6459 | |
| SQC023330 | VP4/2 | 620 | 1050 | 0 | 0 | 431 | |
| SQC023331 | 3D | 5696 | 7075 | 0 | 0 | 1380 | |
| SQC023332 | 2C (P2-C) | 3878 | 4855 | 0 | 0 | 978 | |
| SQC023333 | 1D (VP1) | 2330 | 3154 | 0 | 0 | 825 | |
| SQC023334 | 1B (VP2) | 827 | 1615 | 0 | 0 | 789 | |
| SQC023335 | 1C (VP3) | 1616 | 2329 | 0 | 0 | 714 | |
| SQC023336 | protease 3C | 5147 | 5695 | 0 | 0 | 549 | |
| SQC023337 | 2A (P2-A) | 3155 | 3580 | 0 | 0 | 426 | |
| SQC023338 | 2B (P2-B) | 3581 | 3877 | 0 | 0 | 297 | |
| SQC023339 | 3A (P3-A) | 4856 | 5080 | 0 | 0 | 225 | |
| SQC023340 | 1A (VP4) | 620 | 826 | 0 | 0 | 207 | |
| SQC023341 | 3B (VPg) | 5081 | 5146 | 0 | 0 | 66 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC020018 | CDS | 1 | 2152 | 0 | 0 | 2152 | |
| SPC020057 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC020179 | 3D | 1693 | 2152 | 0 | 0 | 460 | |
| SPC020180 | 2C (P2-C) | 1087 | 1412 | 0 | 0 | 326 | |
| SPC020181 | 1D (VP1) | 571 | 845 | 0 | 0 | 275 | |
| SPC020182 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPC020183 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPC020184 | protease 3C | 1510 | 1692 | 0 | 0 | 183 | |
| SPC020185 | 2A (P2-A) | 846 | 987 | 0 | 0 | 142 | |
| SPC020186 | 2B (P2-B) | 988 | 1086 | 0 | 0 | 99 | |
| SPC020187 | 3A (P3-A) | 1413 | 1487 | 0 | 0 | 75 | |
| SPC020188 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPC020189 | 3B (VPg) | 1488 | 1509 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 37733296 | Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. | 2023 | Microbiol Spectr | View More |