| RVdb StrainID | CNP01212 | GenBank Accession | MW587059.1 |
| Species | RVC | Sequence Length | 7073 nt |
| Serotype | 7 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate S0590XDY polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | S0590XDY | Sampling Date | from 2016-05 to 2017-12 |
| Sampling Country | China | Sampling location | Wuhan |
| Isolation Source | bronchoalveolar lavage fluid | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Megahit v. v1.1.3 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC010467 | 1A (VP4) | 611 | 811 | 0 | 0 | 201 | |
| SQC010468 | 1B (VP2) | 812 | 1600 | 0 | 0 | 789 | |
| SQC010469 | 1C (VP3) | 1601 | 2296 | 0 | 0 | 696 | |
| SQC010470 | 1D (VP1) | 2297 | 3112 | 0 | 0 | 816 | |
| SQC010471 | 2A (P2-A) | 3113 | 3538 | 0 | 0 | 426 | |
| SQC010472 | 2B (P2-B) | 3539 | 3829 | 0 | 0 | 291 | |
| SQC010473 | 2C (P2-C) | 3830 | 4804 | 0 | 0 | 975 | |
| SQC010474 | 3'UTR | 7031 | 7073 | 0 | 0 | 43 | |
| SQC010475 | 3A (P3-A) | 4805 | 5032 | 0 | 0 | 228 | |
| SQC010476 | 3B (VPg) | 5033 | 5098 | 0 | 0 | 66 | |
| SQC010477 | 3D | 5648 | 7027 | 0 | 0 | 1380 | |
| SQC010478 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
| SQC010479 | CDS | 611 | 7030 | 0 | 0 | 6420 | |
| SQC010480 | protease 3C | 5099 | 5647 | 0 | 0 | 549 | |
| SQC010481 | VP4/2 | 611 | 1041 | 0 | 0 | 431 | |
| SQC010482 | genome | 1 | 7073 | 0 | 0 | 7073 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017265 | CDS | 1 | 2139 | 0 | 0 | 2139 | |
| SPC017266 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017267 | 3D | 1680 | 2139 | 0 | 0 | 460 | |
| SPC017268 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC017269 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC017270 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC017271 | 1C (VP3) | 331 | 562 | 0 | 0 | 232 | |
| SPC017272 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC017273 | 2A (P2-A) | 835 | 975 | 0 | 0 | 141 | |
| SPC017274 | 2B (P2-B) | 976 | 1073 | 0 | 0 | 98 | |
| SPC017275 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC017276 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017277 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35176118 | Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China. | 2022 | PLoS Pathog | View More |