| RVdb StrainID | CNM01210 | GenBank Accession | MW587068.1 |
| Species | RVC | Sequence Length | 7038 nt |
| Serotype | 6 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate S0679ZYY polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | S0679ZYY | Sampling Date | from 2016-05 to 2017-12 |
| Sampling Country | China | Sampling location | Wuhan |
| Isolation Source | bronchoalveolar lavage fluid | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Megahit v. v1.1.3 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC005995 | 1A (VP4) | 534 | 734 | 0 | 0 | 201 | |
| SQC005996 | 1B (VP2) | 735 | 1520 | 0 | 0 | 786 | |
| SQC005997 | 1C (VP3) | 1521 | 2219 | 0 | 0 | 699 | |
| SQC005998 | 1D (VP1) | 2220 | 3035 | 0 | 0 | 816 | |
| SQC005999 | 2A (P2-A) | 3036 | 3458 | 0 | 0 | 423 | |
| SQC006000 | 2B (P2-B) | 3459 | 3752 | 0 | 0 | 294 | |
| SQC006001 | 2C (P2-C) | 3753 | 4727 | 0 | 0 | 975 | |
| SQC006002 | 3'UTR | 6954 | 0 | 0 | 1 | 46 | |
| SQC006003 | 3A (P3-A) | 4728 | 4955 | 0 | 0 | 228 | |
| SQC006004 | 3B (VPg) | 4956 | 5021 | 0 | 0 | 66 | |
| SQC006005 | 3D | 5571 | 6950 | 0 | 0 | 1380 | |
| SQC006006 | 5'UTR | 0 | 533 | 1 | 0 | 533 | |
| SQC006007 | CDS | 534 | 6953 | 0 | 0 | 6420 | |
| SQC006008 | protease 3C | 5022 | 5570 | 0 | 0 | 549 | |
| SQC006009 | VP4/2 | 534 | 964 | 0 | 0 | 431 | |
| SQC006010 | genome | 1 | 7038 | 1 | 1 | 7038 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017291 | CDS | 1 | 2139 | 0 | 0 | 2139 | |
| SPC017292 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017293 | 3D | 1680 | 2139 | 0 | 0 | 460 | |
| SPC017294 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC017295 | 1D (VP1) | 560 | 834 | 0 | 0 | 275 | |
| SPC017296 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017297 | 1C (VP3) | 330 | 559 | 0 | 0 | 230 | |
| SPC017298 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC017299 | 2A (P2-A) | 835 | 976 | 0 | 0 | 142 | |
| SPC017300 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC017301 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017302 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35176118 | Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China. | 2022 | PLoS Pathog | View More |