| RVdb StrainID | CNC00134 | GenBank Accession | NC_038878.1 |
| Species | RVC | Sequence Length | 6944 nt |
| Serotype | 1 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus NAT001 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | NAT001 | Sampling Date | 2001-11-15 |
| Sampling Country | -N/A- | Sampling location | -N/A- |
| Isolation Source | nasal lavage fluid from an upper respiratory infection | NCBI Taxon ID | 992230 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000368 | 1A (VP4) | 479 | 685 | 0 | 0 | 207 | |
| SQC000369 | 1B (VP2) | 686 | 1470 | 0 | 0 | 785 | |
| SQC000370 | 1C (VP3) | 1471 | 2173 | 0 | 0 | 703 | |
| SQC000371 | 1D (VP1) | 2174 | 2989 | 0 | 0 | 816 | |
| SQC000372 | 2A (P2-A) | 2990 | 3415 | 0 | 0 | 426 | |
| SQC000373 | 2B (P2-B) | 3416 | 3706 | 0 | 0 | 291 | |
| SQC000374 | 2C (P2-C) | 3707 | 4681 | 0 | 0 | 975 | |
| SQC000375 | 3'UTR | 6908 | 0 | 0 | 1 | 37 | |
| SQC000376 | 3A (P3-A) | 4682 | 4909 | 0 | 0 | 228 | |
| SQC000377 | 3B (VPg) | 4910 | 4975 | 0 | 0 | 66 | |
| SQC000378 | 3D | 5525 | 6904 | 0 | 0 | 1380 | |
| SQC000379 | 5'UTR | 0 | 478 | 1 | 0 | 478 | |
| SQC000380 | CDS | 479 | 6907 | 0 | 0 | 6429 | |
| SQC000381 | protease 3C | 4976 | 5524 | 0 | 0 | 549 | |
| SQC000382 | VP4/2 | 479 | 909 | 0 | 0 | 431 | |
| SQC000383 | genome | 1 | 6944 | 1 | 1 | 6944 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC019975 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC019976 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC019977 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC019978 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC019979 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC019980 | 1C (VP3) | 332 | 566 | 0 | 0 | 235 | |
| SPC019981 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC019982 | 2A (P2-A) | 838 | 978 | 0 | 0 | 141 | |
| SPC019983 | 2B (P2-B) | 979 | 1076 | 0 | 0 | 98 | |
| SPC019984 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC019985 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC019986 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17703411 | Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. | 2007 | J Infect Dis | View More |