| RVdb StrainID | CNC00054 | GenBank Accession | OM001354.1 |
| Species | RVC | Sequence Length | 6946 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus C1 strain RvC1/USA/2021/TT6ABD, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC1/USA/2021/TT6ABD | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219416 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000146 | 1A (VP4) | 479 | 685 | 0 | 0 | 207 | |
| SQC000147 | 1B (VP2) | 686 | 1470 | 0 | 0 | 785 | |
| SQC000148 | 1C (VP3) | 1471 | 2179 | 0 | 0 | 709 | |
| SQC000149 | 1D (VP1) | 2180 | 2995 | 0 | 0 | 816 | |
| SQC000150 | 2A (P2-A) | 2996 | 3418 | 0 | 0 | 423 | |
| SQC000151 | 2B (P2-B) | 3419 | 3712 | 0 | 0 | 294 | |
| SQC000152 | 2C (P2-C) | 3713 | 4687 | 0 | 0 | 975 | |
| SQC000153 | 3'UTR | 6914 | 0 | 0 | 1 | 33 | |
| SQC000154 | 3A (P3-A) | 4688 | 4915 | 0 | 0 | 228 | |
| SQC000155 | 3B (VPg) | 4916 | 4981 | 0 | 0 | 66 | |
| SQC000156 | 3D | 5531 | 6910 | 0 | 0 | 1380 | |
| SQC000157 | 5'UTR | 0 | 478 | 1 | 0 | 478 | |
| SQC000158 | CDS | 479 | 6913 | 0 | 0 | 6435 | |
| SQC000159 | protease 3C | 4982 | 5530 | 0 | 0 | 549 | |
| SQC000160 | VP4/2 | 479 | 909 | 0 | 0 | 431 | |
| SQC000161 | genome | 1 | 6946 | 1 | 1 | 6946 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC015939 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC015940 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC015941 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC015942 | 2C (P2-C) | 1079 | 1403 | 0 | 0 | 325 | |
| SPC015943 | 1D (VP1) | 565 | 839 | 0 | 0 | 275 | |
| SPC015944 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC015945 | 1C (VP3) | 332 | 564 | 0 | 0 | 233 | |
| SPC015946 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC015947 | 2A (P2-A) | 840 | 980 | 0 | 0 | 141 | |
| SPC015948 | 2B (P2-B) | 981 | 1078 | 0 | 0 | 98 | |
| SPC015949 | 3A (P3-A) | 1404 | 1479 | 0 | 0 | 76 | |
| SPC015950 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC015951 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |