| RVdb StrainID | BNP00787 | GenBank Accession | KY348863.1 |
| Species | RVB | Sequence Length | 7183 nt |
| Serotype | 48 Checked by RVdb | Serotype (GenBank) | 48 |
| Definition | Rhinovirus B48 isolate CL7091225 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | CL7091225 | Sampling Date | 2012 |
| Sampling Country | Switzerland | Sampling location | -N/A- |
| Isolation Source | nasopharyngeal aspirate | NCBI Taxon ID | 147679 |
| Sequencing Technology | Illumina | Assembly Method | IDBA-UD v. 2012 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004005 | 1A (VP4) | 609 | 815 | 0 | 0 | 207 | |
| SQB004006 | 1B (VP2) | 816 | 1601 | 0 | 0 | 786 | |
| SQB004007 | 1C (VP3) | 1602 | 2309 | 0 | 0 | 708 | |
| SQB004008 | 1D (VP1) | 2310 | 3191 | 0 | 0 | 882 | |
| SQB004009 | 2A (P2-A) | 3192 | 3628 | 0 | 0 | 437 | |
| SQB004010 | 2B (P2-B) | 3629 | 3920 | 0 | 0 | 292 | |
| SQB004011 | 2C (P2-C) | 3921 | 4910 | 0 | 0 | 990 | |
| SQB004012 | 3A (P3-A) | 4911 | 5165 | 0 | 0 | 255 | |
| SQB004013 | 3B (VPg) | 5166 | 5234 | 0 | 0 | 69 | |
| SQB004014 | 3D | 5781 | 7160 | 0 | 0 | 1380 | |
| SQB004015 | 5'UTR | 1 | 608 | 1 | 0 | 608 | |
| SQB004016 | CDS | 609 | 7163 | 0 | 0 | 6555 | |
| SQB004017 | protease 3C | 5235 | 5780 | 0 | 0 | 546 | |
| SQB004018 | VP4/2 | 609 | 1045 | 0 | 0 | 437 | |
| SQB004019 | genome | 1 | 7183 | 1 | 1 | 7183 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB002839 | protease 3C | 1543 | 1724 | 0 | 0 | 182 | |
| SPB002840 | 3D | 1725 | 2184 | 0 | 0 | 460 | |
| SPB002841 | 3B (VPg) | 1520 | 1542 | 0 | 0 | 23 | |
| SPB002842 | 3A (P3-A) | 1435 | 1519 | 0 | 0 | 85 | |
| SPB002843 | 2C (P2-C) | 1105 | 1434 | 0 | 0 | 330 | |
| SPB002844 | 2B (P2-B) | 1008 | 1104 | 0 | 0 | 97 | |
| SPB002845 | 2A (P2-A) | 864 | 1007 | 0 | 0 | 144 | |
| SPB002846 | 1D (VP1) | 568 | 863 | 0 | 0 | 296 | |
| SPB002847 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB002848 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB002849 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB002850 | CDS | 1 | 2184 | 0 | 0 | 2184 | |
| SPB002851 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 28797733 | Propagation of respiratory viruses in human airway epithelia reveals persistent virus-specific signatures. | 2018 | J Allergy Clin Immunol | View More |