| RVdb StrainID | ANZ00161 | GenBank Accession | OM001382.1 |
| Species | RVA | Sequence Length | 7085 nt |
| Serotype | 80 Checked by RVdb | Serotype (GenBank) | 80 |
| Definition | Rhinovirus A80 strain RvA80/USA/2021/JQ52KS, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA80/USA/2021/JQ52KS | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185934 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA031741 | 1A (VP4) | 569 | 775 | 0 | 0 | 207 | |
| SQA031742 | 1B (VP2) | 776 | 1561 | 0 | 0 | 786 | |
| SQA031743 | 1C (VP3) | 1562 | 2275 | 0 | 0 | 714 | |
| SQA031744 | 1D (VP1) | 2276 | 3151 | 0 | 0 | 876 | |
| SQA031745 | 2A (P2-A) | 3152 | 3580 | 0 | 0 | 429 | |
| SQA031746 | 2B (P2-B) | 3581 | 3865 | 0 | 0 | 285 | |
| SQA031747 | 2C (P2-C) | 3866 | 4828 | 0 | 0 | 963 | |
| SQA031748 | 3'UTR | 7052 | 7085 | 0 | 1 | 34 | |
| SQA031749 | 3A (P3-A) | 4829 | 5059 | 0 | 0 | 231 | |
| SQA031750 | 3B (VPg) | 5060 | 5122 | 0 | 0 | 63 | |
| SQA031751 | protease 3C | 5123 | 5671 | 0 | 0 | 549 | |
| SQA031752 | 3D | 5672 | 7048 | 0 | 0 | 1377 | |
| SQA031753 | 5'UTR | 1 | 568 | 1 | 0 | 568 | |
| SQA031754 | CDS | 569 | 7051 | 0 | 0 | 6483 | |
| SQA031755 | VP4/2 | 569 | 1003 | 0 | 0 | 435 | |
| SQA031756 | genome | 1 | 7085 | 1 | 1 | 7085 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA026652 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA026653 | 3D | 1702 | 2158 | 0 | 0 | 457 | |
| SPA026654 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA026655 | 3A (P3-A) | 1421 | 1497 | 0 | 0 | 77 | |
| SPA026656 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA026657 | 2B (P2-B) | 1006 | 1099 | 0 | 0 | 94 | |
| SPA026658 | 2A (P2-A) | 862 | 1005 | 0 | 0 | 144 | |
| SPA026659 | 1D (VP1) | 570 | 861 | 0 | 0 | 292 | |
| SPA026660 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA026661 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA026662 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA026663 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA026664 | CDS | 1 | 2160 | 0 | 0 | 2160 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |