| RVdb StrainID | ANS06548 | GenBank Accession | KC881034.1 |
| Species | RVA | Sequence Length | 7123 nt |
| Serotype | 1 Corrected by RVdb | Serotype (GenBank) | 1B |
| Definition | Human rhinovirus 1B strain HRV-1B_P10 polyprotein gene, complete cds | GenBank Submission Date | 2015-05-06 |
| Strain Name | HRV-1B_P10 | Sampling Date | 2011 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777147 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | CLC DNA Workbench v. 6 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA029379 | 1A (VP4) | 613 | 819 | 0 | 0 | 207 | |
| SQA029380 | 1B (VP2) | 820 | 1608 | 0 | 0 | 789 | |
| SQA029381 | 1C (VP3) | 1609 | 2322 | 0 | 0 | 714 | |
| SQA029382 | 1D (VP1) | 2323 | 3183 | 0 | 0 | 861 | |
| SQA029383 | 2A (P2-A) | 3184 | 3609 | 0 | 0 | 426 | |
| SQA029384 | 2B (P2-B) | 3610 | 3894 | 0 | 0 | 285 | |
| SQA029385 | 2C (P2-C) | 3895 | 4860 | 0 | 0 | 966 | |
| SQA029386 | 3'UTR | 7087 | 7123 | 0 | 1 | 37 | |
| SQA029387 | 3A (P3-A) | 4861 | 5091 | 0 | 0 | 231 | |
| SQA029388 | 3B (VPg) | 5092 | 5154 | 0 | 0 | 63 | |
| SQA029389 | protease 3C | 5155 | 5703 | 0 | 0 | 549 | |
| SQA029390 | 3D | 5704 | 7083 | 0 | 0 | 1380 | |
| SQA029391 | 5'UTR | 1 | 612 | 1 | 0 | 612 | |
| SQA029392 | CDS | 613 | 7086 | 0 | 0 | 6474 | |
| SQA029393 | VP4/2 | 613 | 1047 | 0 | 0 | 435 | |
| SQA029394 | genome | 1 | 7123 | 1 | 1 | 7123 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA007622 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA007623 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA007624 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA007625 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA007626 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA007627 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA007628 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA007629 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA007630 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA007631 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA007632 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA007633 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA007634 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 25561542 | Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells. | 2015 | Proc Natl Acad Sci U S A | View More |