| RVdb StrainID | ANP00202 | GenBank Accession | OL961534.1 |
| Species | RVA | Sequence Length | 7121 nt |
| Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
| Definition | Rhinovirus A20 strain RvA20/USA/2021/P2XNDN, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA20/USA/2021/P2XNDN | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147675 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA016329 | 1A (VP4) | 592 | 798 | 0 | 0 | 207 | |
| SQA016330 | 1B (VP2) | 799 | 1584 | 0 | 0 | 786 | |
| SQA016331 | 1C (VP3) | 1585 | 2298 | 0 | 0 | 714 | |
| SQA016332 | 1D (VP1) | 2299 | 3189 | 0 | 0 | 891 | |
| SQA016333 | 2A (P2-A) | 3190 | 3618 | 0 | 0 | 429 | |
| SQA016334 | 2B (P2-B) | 3619 | 3903 | 0 | 0 | 285 | |
| SQA016335 | 2C (P2-C) | 3904 | 4866 | 0 | 0 | 963 | |
| SQA016336 | 3'UTR | 7093 | 7121 | 0 | 1 | 29 | |
| SQA016337 | 3A (P3-A) | 4867 | 5100 | 0 | 0 | 234 | |
| SQA016338 | 3B (VPg) | 5101 | 5163 | 0 | 0 | 63 | |
| SQA016339 | protease 3C | 5164 | 5712 | 0 | 0 | 549 | |
| SQA016340 | 3D | 5713 | 7089 | 0 | 0 | 1377 | |
| SQA016341 | 5'UTR | 1 | 591 | 1 | 0 | 591 | |
| SQA016342 | CDS | 592 | 7092 | 0 | 0 | 6501 | |
| SQA016343 | VP4/2 | 592 | 1026 | 0 | 0 | 435 | |
| SQA016344 | genome | 1 | 7121 | 1 | 1 | 7121 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027666 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
| SPA027667 | 3D | 1708 | 2166 | 0 | 0 | 459 | |
| SPA027668 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
| SPA027669 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
| SPA027670 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA027671 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA027672 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
| SPA027673 | 1D (VP1) | 570 | 866 | 0 | 0 | 297 | |
| SPA027674 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA027675 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA027676 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027677 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027678 | CDS | 1 | 2166 | 0 | 0 | 2166 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |